xulman
computer science, image processing
IT4I @ VSB.cz & CBIA @ FI.MUNI.cz & CEITEC @ MUNI.czOstrava & Brno, Czech Republic
Pinned Repositories
fiji-plugins
Front-end Fiji plugins that make accessible the CTC measures.
hpc-datastore
Server-side of the HPC DataStore project - Java API, shell scripts
hpc-workflow-manager-full
mastodon-ctc
Mastodon plugins to import from and export to (not only) the CellTrackingChallenge format
graphics-net-transfers
...ment for cell tracking data transfers
HackBrno23_introIntoImglib2AndBDV
Collection of example and try-yourself pieces of code to get familiar with ImgLib2 and BDV
mastodon-sciview-take2
a product of the sciview+scenery_towards_v1.0 hackathon
ome-zarr-fiji-ui
GUI Dialog to show structure of an ome.zarr dataset and to allow the user to cherry-pick image of interest, in Fiji.
TomancakLab
A couple of Fiji scripts to ease daily evo-devo image analysis life, from Tomancak lab @ MPI-CBG, Dresden, GE
xulman's Repositories
xulman/ome-zarr-fiji-ui
GUI Dialog to show structure of an ome.zarr dataset and to allow the user to cherry-pick image of interest, in Fiji.
xulman/TomancakLab
A couple of Fiji scripts to ease daily evo-devo image analysis life, from Tomancak lab @ MPI-CBG, Dresden, GE
xulman/EmbryoGen
Simulator of artificial time-lapse images from developmental biology
xulman/HackBrno23_introIntoImglib2AndBDV
Collection of example and try-yourself pieces of code to get familiar with ImgLib2 and BDV
xulman/mastodon-sciview-take2
a product of the sciview+scenery_towards_v1.0 hackathon
xulman/xulman.github.io
playground with a test web site content
xulman/graphics-net-transfers
...ment for cell tracking data transfers
xulman/bigdataviewer-core
ImgLib2-based viewer for registered SPIM stacks and more
xulman/cells
xulman/EmbryoGen_SpheresAndSDFs
a test ground to develop tracking of implicitly represented shape with spheres-based geometry
xulman/emoji-cheat-sheet
A markdown version emoji cheat sheet
xulman/ericportela2-imglib2-www
xulman/experimental-projects
...contains various experimental codes.
xulman/imagej-legacy
ImageJ+ImageJ2 compatibility layer
xulman/imglib2
A generic next-generation Java library for image processing
xulman/imglib2-blog
ImgLib2 news and tutorials
xulman/IO
xulman/labkit-ui
Advanced Tool for Labeling And Segmentation
xulman/local-gui-help
A framework for Java apps that attaches and shows simple help dialogs/wizzards to developer-chosen GUI controls.
xulman/logs-processor
Processes multiple logs and displays them in a unified single view.
xulman/mastodon
This is the prototype code for the 3rd version of TrackMate, planned for mid 2017.
xulman/mastodon-example-data
xulman/mastodon-sc_main_github_page
Public organization profile for the Mastodon-SC organization.
xulman/mastodon-tomancak
xulman/openSPIM_images_resaver
xulman/scenery
Flexible VR Visualisation for Volumetric and Geometric Data on the Java VM, powered by Kotlin and Vulkan
xulman/scijava-common
A plugin framework and application container with built-in extensibility mechanism :electric_plug:
xulman/sciview
SciView is an ImageJ-based tool for visualization and interaction with ND data
xulman/simplified-io
Read, write, type convert images using simple methods.
xulman/SimViewer
A 0MQ-connected, scenery-based viewer to display (primarily EmbryoGen's) graphics.