xulman
computer science, image processing
IT4I @ VSB.cz & CBIA @ FI.MUNI.cz & CEITEC @ MUNI.czOstrava & Brno, Czech Republic
Pinned Repositories
fiji-plugins
Front-end Fiji plugins that make accessible the CTC measures.
hpc-datastore
Server-side of the HPC DataStore project - Java API, shell scripts
hpc-workflow-manager-full
mastodon-ctc
Mastodon plugins to import from and export to (not only) the CellTrackingChallenge format
graphics-net-transfers
...ment for cell tracking data transfers
HackBrno23_introIntoImglib2AndBDV
Collection of example and try-yourself pieces of code to get familiar with ImgLib2 and BDV
mastodon-sciview-take2
a product of the sciview+scenery_towards_v1.0 hackathon
ome-zarr-fiji-ui
GUI Dialog to show structure of an ome.zarr dataset and to allow the user to cherry-pick image of interest, in Fiji.
TomancakLab
A couple of Fiji scripts to ease daily evo-devo image analysis life, from Tomancak lab @ MPI-CBG, Dresden, GE
xulman's Repositories
xulman/bigdataviewer_fiji
Fiji plugins for starting BigDataViewer and exporting data.
xulman/imglib2-algorithm
Image processing algorithms for ImgLib2
xulman/pom-scijava
Friendly base POM for all SciJava-based software