Pinned Repositories
ads1-notebooks
Copies of notebooks used in the practical sessions for Algorithms for DNA Sequencing
Algorithms-for-DNA-Sequencing
Coursera MOOC Algorithms for DNA Sequencing by Ben Langmead, PhD, Jacob Pritt
amr
amr_finder
AppliedGenomeResearch
course about NGS data processing: genomics and transcriptomics
ariba
Antimicrobial Resistance Identification By Assembly
Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
bactopia
A flexible pipeline for complete analysis of bacterial genomes
BCB546_Spring2023
Materials for EEOB/BCB546: Bioinformatics data skills
bds-files
Supplementary files for my book, "Bioinformatics Data Skills"
bioinformatics
An Introductory Undergraduate course in Bioinformatics
yananzh's Repositories
yananzh/AppliedGenomeResearch
course about NGS data processing: genomics and transcriptomics
yananzh/Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
yananzh/bioinformatics
An Introductory Undergraduate course in Bioinformatics
yananzh/bioinformatics-1
:microscope: Path to a free self-taught education in Bioinformatics!
yananzh/CAFE5
Version 5 of the CAFE phylogenetics software
yananzh/cs-video-courses
List of Computer Science courses with video lectures.
yananzh/CyVerese_SNP_calling_webinar
yananzh/dev-sidecar
开发者边车，github打不开，github加速，git clone加速，git release下载加速，stackoverflow加速
yananzh/dot
Dot: An interactive dot plot viewer for comparative genomics
yananzh/Easyfig
Development version of Easyfig
yananzh/genomegaMap
Within-species genome-wide dN/dS estimation from very many genomes
yananzh/GSAlign
GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison
yananzh/jcvi
Python library to facilitate genome assembly, annotation, and comparative genomics
yananzh/learning-bioinformatics-at-home
resources for learning bioinformatics
yananzh/Linux-Shell-Scripting-Cookbook-Third-Edition
Linux Shell Scripting Cookbook Third Edition, published by Packt
yananzh/Mash
Fast genome and metagenome distance estimation using MinHash
yananzh/MGEfinder
A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
yananzh/mummer
Mummer alignment tool
yananzh/OrthoFinder
Phylogenetic orthology inference for comparative genomics
yananzh/orthologr
Genome wide orthology inference and dNdS estimation
yananzh/pfb2019
Programming for Biology 2019
yananzh/pilon
Pilon is an automated genome assembly improvement and variant detection tool
yananzh/prokseq-v2.0
yananzh/RegReplace
Simple find and replace sequencer plugin for Sublime Text http://facelessuser.github.io/RegReplace/
yananzh/treeWAS
treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes
yananzh/tutorials
:books: Various bioinformatics tutorials
yananzh/Unicycler
hybrid assembly pipeline for bacterial genomes
yananzh/vcftools
A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.
yananzh/wgd
Python package and CLI for whole-genome duplication related analyses
yananzh/wgdi
Finely identify the whole genome duplication events and generate the genomic homology tables.