Pinned Repositories
2017_2018-single-cell-RNA-sequencing-Workshop-UCD_UCB_UCSF
2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF
ads1-notebooks
Copies of notebooks used in the practical sessions for Algorithms for DNA Sequencing
awesome-chatgpt-prompts
This repo includes ChatGPT prompt curation to use ChatGPT better.
bds-files
Supplementary files for my book, "Bioinformatics Data Skills"
Chuhua-Yang
dap
software package for integrative genetic association analysis
dx-toolkit
DNAnexus platform client libraries
epigraphdb-r
R package for epigraphdb
rnaseq
RNA-seq quantification pipeline used by the eQTL Catalogue
yangchuhua's Repositories
yangchuhua/rnaseq
RNA-seq quantification pipeline used by the eQTL Catalogue
yangchuhua/awesome-chatgpt-prompts
This repo includes ChatGPT prompt curation to use ChatGPT better.
yangchuhua/Chuhua-Yang
yangchuhua/dap
software package for integrative genetic association analysis
yangchuhua/dx-toolkit
DNAnexus platform client libraries
yangchuhua/epigraphdb-r
R package for epigraphdb
yangchuhua/fusion_twas
methods for functional summary-based imputation
yangchuhua/gene_features
gene_features for PoPS
yangchuhua/genetics-backend
QC, spin VMs, load data into DBs, create LUTs and other fun backend stuff we need to do to spin https://genetics.opentargets.org
yangchuhua/gtex-gwas-analysis
yangchuhua/gtex-pipeline
GTEx & TOPMed data production and analysis pipelines
yangchuhua/gtex-v8
Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper
yangchuhua/Guideline-for-Computational-Biology-and-Bioinformatics
yangchuhua/HumanSystemOptimization
健康学习到150岁 - 人体系统调优不完全指南
yangchuhua/ilus
A handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysis. 一个简易且全面的 WGS/WES 分析流程生成器.
yangchuhua/kali-Linux-learning
🐺Kali Linux学习资料（Books&WebSites）
yangchuhua/learn-regex
Learn regex the easy way
yangchuhua/Mastering-Machine-Learning-with-R-Second-Edition
Mastering Machine Learning with R, Second Edition by Packt
yangchuhua/MetaXcan
MetaXcan software and manuscript
yangchuhua/pops
Polygenic prioritization of candidate causal genes (PoPS)
yangchuhua/PredictDb-nextflow
yangchuhua/pytorch_tutorials
PyTorch tutorials.
yangchuhua/qcnorm
This pipeline will run QC measures of both genotype and phenotype data and will normalise quantified phenotypes
yangchuhua/single-cell-tutorial
Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
yangchuhua/singularity-rstudio
RStudio Server in a Singularity container
yangchuhua/The-Art-of-Linear-Algebra
Graphic notes on Gilbert Strang's "Linear Algebra for Everyone"
yangchuhua/Training_Bioinformatics
A full skills list requirements for a fresh bioinformatics student
yangchuhua/UKB_RAP
Access share reviewed code & Jupyter Notebooks for use on the UK Biobank (UKBB) Research Application Platform. Includes resources from DNAnexus webinars, online trainings and workshops.
yangchuhua/variant-calling-pipeline-gatk4
Variant Calling Pipeline Using GATK4 and Nextflow
yangchuhua/zotero-better-notes
Everything about note management. All in Zotero.