Nextflow workflow for Predixcan
Install nextflow from offfical Nextflow website or Bioconda.
Bioconda installation steps
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Ensure miconda is set up on your machine
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Create an environment to install nextflow
conda create -n env_name -
Activate the newly created environment
conda activate env_name -
Install nextflow to the environment
conda install nextflow -
Once set up we are ready to run the workflow on our data
Details on the usage of PredictDb are available here.
Description of file formats used is found here.