Pinned Repositories
BoidsFun
Boids model simulation for fun
excel-data-plotter
Developed with the help of chatGPT. Prompt history included in the commits.
explore_lif
load an image from lif file as a numpy array
FishPy
Python Scripts for processing fish videos
FishSim
Simulating collective behaviour of fish
nplocate
locate nano particles in 3D volumetric confocal images
phd-thesis-yy-bristol-2022
Yushi Yang PhD Thesis 2022 University of Bristol
segview
visualising segmentation result
tcclib
Python wrapper for Topological Cluster Classification
yangyushi's Repositories
yangyushi/FishPy
Python Scripts for processing fish videos
yangyushi/explore_lif
load an image from lif file as a numpy array
yangyushi/FishSim
Simulating collective behaviour of fish
yangyushi/tcclib
Python wrapper for Topological Cluster Classification
yangyushi/nplocate
locate nano particles in 3D volumetric confocal images
yangyushi/phd-thesis-yy-bristol-2022
Yushi Yang PhD Thesis 2022 University of Bristol
yangyushi/segview
visualising segmentation result
yangyushi/BoidsFun
Boids model simulation for fun
yangyushi/draw_spheres_3d
Draw binary sphere in a 3D image
yangyushi/TCC
The Topological Cluster Classification algorithm
yangyushi/yaggie
package used in THETA project in BCFN
yangyushi/yangyushi.github.io
my notebook
yangyushi/excel-data-plotter
Developed with the help of chatGPT. Prompt history included in the commits.
yangyushi/hsmc
Hard Sphere Monte Carlo Simulation
yangyushi/brcs
biased random colours
yangyushi/bulb_control
controlling TP-Link smart bulb (Kasa) for scientific reasons
yangyushi/colloids
Python and C++ library to process both experimental and simulation data of colloidal particles.
yangyushi/Coursera_Capstone
To submit the assignments for the data science course on Coursera
yangyushi/expdyn
dynamical analysis for experimental trajectories
yangyushi/ezdata
handy gui app to process experimental data
yangyushi/first-contributions
🚀✨ Help beginners to contribute to open source projects
yangyushi/FishPy-Benchmark
Benchmarking the 3D Tracking Accuracy of FishPy package. Also serves as a demonstration.
yangyushi/ising-mc
simulation just for fun!
yangyushi/learn-tiff
Learning to work with lib tiff
yangyushi/peri
Parameter Extraction from Reconstructing Images
yangyushi/projective_correct
example code to correct the projective in the image
yangyushi/vim-config-yy
yangyushi/zefiia
zebrafish image analysis