/zefiia

zebrafish image analysis

Primary LanguageJupyter Notebook

[Ze]bra[fi]sh [i]mage [a]nalysis

What is this

This is a collection of python scripts that I developed for analysing the x-ray image of zebrafish. It is part of an interdisciplinary project with Adil Dahlan, Erika Kague, Irina Naskinova, John Healy, Kathleen Curran, and Katie Noonan.

How to use the code

The easiest way would be

pip install git+https://github.com/yangyushi/zefiia.git

Alternatively, you can go through the following steps.

  1. Clone or download this repository to your own device.
  2. Open a terminal/cmd/whatever, and navigate to the folder of the repository
  3. execute the following command
pip install .

Issues

At this moment everything is written by me. If you are using the code and find some problems, please open an issue or send me an email.