yhoogstrate

yhoogstrate's Stars

• tonsky/FiraCode

  Free monospaced font with programming ligatures

  Language:Clojure77k7171.3k3.1k

• bregman-arie/devops-exercises

  Linux, Jenkins, AWS, SRE, Prometheus, Docker, Python, Ansible, Git, Kubernetes, Terraform, OpenStack, SQL, NoSQL, Azure, GCP, DNS, Elastic, Network, Virtualization. DevOps Interview Questions

  Language:Python66.3k1.2k8714.8k

• bowang-lab/scGPT

  Language:Jupyter Notebook1k34228196

• easystats/see

  :art: Visualisation toolbox for beautiful and publication-ready figures

  Language:R8902318043

• mjskay/ggdist

  Visualizations of distributions and uncertainty

  Language:R848923826

• bwa-mem2/bwa-mem2

  The next version of bwa-mem

  Language:C++7203621398

• hbctraining/scRNA-seq_online

  Language:R5121395178

• ctlab/fgsea

  Fast Gene Set Enrichment Analysis

  Language:R3721912767

• BayraktarLab/cell2location

  Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)

  Language:Python313724157

• dylkot/cNMF

  Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data

  Language:Jupyter Notebook27069157

• constantAmateur/SoupX

  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data

  Language:R257614734

• erocoar/gghalves

  ✂️ Easy half-half geoms in ggplot2

  Language:R24152213

• showteeth/ggcoverage

  Visualize and annotate genomic coverage with ggplot2

  Language:R22753320

• cannadayr/git-sqlite

  A custom diff and merge driver for sqlite

  Language:Shell166523

• JiekaiLab/scDIOR

  scDIOR: Single cell data IO softwaRe

  Language:HTML13162311

• zwdzwd/sesame

  🍪 SEnsible Step-wise Analysis of DNA MEthylation BeadChips

  Language:R58714331

• KirillKryukov/naf

  Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences

  Language:C56476

• yiluyucheng/dnaMethyAge

  Predict epigenetic age from DNA methylation data

  Language:R3631310

• zraorg/ZRA

  ZStandard Random Access (ZRA) allows random access inside an archive compressed using ZStandard

  Language:C++31433

• mbhall88/compression_benchmark

  Benchmarking FASTQ compression with 'mature' compression algorithms

  Language:Python30154

• PacificBiosciences/pbfusion

  Language:Python19502

• fsvarn/GLASSx

  GLASS consortium

  Language:R134188

• mwsill/RFpurify

  RF model and functions to estimate tumor purity using methylation data

  Language:R7333

• plaisier-lab/U5_hNSC_Neural_G0

  Neural G0: a quiescent-like state found in neuroepithelial-derived cells and glioma

  Language:R7201

• althonos/nafcodec

  Rust coder/decoder for Nucleotide Archival Format (NAF) files.

  Language:Rust5201

• ErasmusMC-Neuro-Oncology/scRNA-glioma-workflows

  Workflows for the processing of public and in-house spatial and/or single cell/nucleus RNA-seq glioma datasets

  Language:R2101

• ErlantzGonSan/Masther-Thesis-2020

  Identification of circRNAs and their function in Prostate cancer

  Language:R110

• j-schlesinger/nafcodec

  Rust coder/decoder for Nucleotide Archive Format (NAF) files.

  Language:Rust100

• santoesha/molecular_grading_astroyctoma

  Language:R1100

• trafficone/naf

  Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences

  Language:C1000