Pinned Repositories
cancer-phylogenetics-prognostic-prediction
Improving Personalized Prediction of Cancer Prognoses with Clonal Evolution Models
RAD
Robust and Accurate Deconvolution
CITRUS
roamresearch
AvatarsFun
Someone says that these avatars are similar... Is that true?
CADRE
CADRE: Contextual Attention-based Drug REsponse
CellCounter
ImageJ Macro scripts for counting number of cells.
DeepSurv
DeepSurv is a deep learning approach to survival analysis.
genome-transformer
Predicting multiple cancer phenotypes based on somatic genomic alterations via the genomic impact transformer
roamresearch
yifengtao's Repositories
yifengtao/genome-transformer
Predicting multiple cancer phenotypes based on somatic genomic alterations via the genomic impact transformer
yifengtao/CADRE
CADRE: Contextual Attention-based Drug REsponse
yifengtao/DeepSurv
DeepSurv is a deep learning approach to survival analysis.
yifengtao/roamresearch
yifengtao/Gene2vec-1
Gene2Vec: Distributed Representation of Genes Based on Co-Expression
yifengtao/picobrew
Pieces of code for biomedical research work (in Python)
yifengtao/yifengtao.github.io
Yifeng Tao's homepage
yifengtao/996.ICU
Repo for counting stars and contributing. Press F to pay respect to glorious developers.
yifengtao/BERT-multi-gpu
multi gpu training in one machine for BERT
yifengtao/bilstm_crf
yifengtao/chatbot_Q-A_NLP
yifengtao/CITRUS-1
yifengtao/coding-interview-university
A complete computer science study plan to become a software engineer.
yifengtao/DeepLearningSurvival
PyTorch implementation of Deep Survival Models.
yifengtao/DPPI
A convolutional neural network to predict PPI interactions
yifengtao/drsa
Deep Recurrent Survival Analysis, an auto-regressive deep model for time-to-event data analysis with censorship handling.
yifengtao/jnci_2018
Recurrent gains in RET and HER2 signaling represent clinically actionable targets in breast cancer brain metastases
yifengtao/LearnToPayAttention
PyTorch implementation of ICLR 2018 paper Learn To Pay Attention (and some modification)
yifengtao/leetcode-share
This repository shares my leetcode problems solving experience.
yifengtao/LinSeed
Linseed (LINear Subspace identification for gene Expresion Deconvolution) is a package that provides tools and interface to explore gene expression datasets in linear space and perform complete gene expression deconvolution.
yifengtao/protein-sequence-embedding-iclr2019
Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019
yifengtao/SCS_deconvolution
code implementing methods for pooling bulk and single cell data for copy number deconvolution
yifengtao/Seq2Seq-PyTorch
Sequence to Sequence Models with PyTorch
yifengtao/stockpredictionai
In this noteboook I will create a complete process for predicting stock price movements. Follow along and we will achieve some pretty good results. For that purpose we will use a Generative Adversarial Network (GAN) with LSTM, a type of Recurrent Neural Network, as generator, and a Convolutional Neural Network, CNN, as a discriminator. We use LSTM for the obvious reason that we are trying to predict time series data. Why we use GAN and specifically CNN as a discriminator? That is a good question: there are special sections on that later.
yifengtao/structuredprediction.github.io
yifengtao/Survival-Analysis-using-Deep-Learning
This repository contains morden baysian statistics and deep learning based research articles , software for survival analysis
yifengtao/ticker.sh
Real-time stock tickers from the command-line.
yifengtao/transfer
Transfer Learning for Sequence Tagging with Hierarchical Recurrent Networks
yifengtao/Weaver
Allele-Specific Quantification of Structural Variations in Cancer Genomes
yifengtao/WebRobot
Scripts to realize ligand searching task automatically in the course: Introduction to Computational Structural Biology.