Pinned Repositories
A-Deep-Learning-Model-for-Predicting-Next-Generation-Sequencing-Depth-from-DNA-Sequence
A Deep Learning Model for Predicting Next-Generation Sequencing Depth from DNA Sequence
AGAPE
AGAPE (Automated Genome Analysis PipelinE) for yeast pan-genome analysis
airrflow
B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework
alphaflow
AlphaFold Meets Flow Matching for Generating Protein Ensembles
alphafold_non_docker
AlphaFold2 non-docker setup
Analysing-10X-ScRNA-data-Wang-et-al-2020-Nat-Commun-
I redo the ScRNA analysis in the paper of Wang et al 2020, Nat Comm. Here's my modified script for Helen He Zhu github (https://github.com/HelenHeZhu/StemCell)
asp_pan
Generating large pangenome for Aspergillus fumigatus
atac-seq-pipeline
ENCODE ATAC-seq pipeline
snakepipes
A toolkit based on snakemake and python for analysis of NGS data
yirenheihei's Repositories
yirenheihei/airrflow
B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework
yirenheihei/alphaflow
AlphaFold Meets Flow Matching for Generating Protein Ensembles
yirenheihei/alphafold_non_docker
AlphaFold2 non-docker setup
yirenheihei/awesome-BioMolFold
RNA, mRNA, DNA, Peptide, Protein, Antibody and Complex | Folding
yirenheihei/Awesome-Diffusion-Models
A collection of resources and papers on Diffusion Models
yirenheihei/CBGBench
Official code repository of CBGBench: Fill in the Blank of Protein-Molecule Complex Binding Graph
yirenheihei/ChatGLM-Finetuning
基于ChatGLM-6B模型，进行下游具体任务微调，涉及Freeze、Lora、P-tuning等
yirenheihei/CLAM
Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering
yirenheihei/CMWTAT_Digital_Edition
CloudMoe Windows 10/11 Activation Toolkit get digital license, the best open source Win 10/11 activator in GitHub. GitHub 上最棒的开源 Win10/Win11 数字权利（数字许可证）激活工具！
yirenheihei/DARC
Decentralized Autonomous Regulated Company (DARC), a company virtual machine that runs on any EVM-compatible blockchain, with on-chain law system, multi-level tokens and dividends mechanism.
yirenheihei/evodiff
Generation of protein sequences and evolutionary alignments via discrete diffusion models
yirenheihei/GeoDiff
Implementation of GeoDiff: a Geometric Diffusion Model for Molecular Conformation Generation (ICLR 2022).
yirenheihei/gpt-translated-pdf-zh
yirenheihei/ImageAI
A python library built to empower developers to build applications and systems with self-contained Computer Vision capabilities
yirenheihei/JoJoGAN
Official PyTorch repo for JoJoGAN: One Shot Face Stylization
yirenheihei/lihang-code
《统计学习方法》的代码实现
yirenheihei/LLMsNineStoryDemonTower
【LLMs九层妖塔】分享 LLMs在自然语言处理（ChatGLM、Chinese-LLaMA-Alpaca、小羊驼 Vicuna、LLaMA、GPT4ALL等）、信息检索（langchain）、语言合成、语言识别、多模态等领域（Stable Diffusion、MiniGPT-4、VisualGLM-6B、Ziya-Visual等）等 实战与经验。
yirenheihei/masif
MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.
yirenheihei/MedicalGPT
MedicalGPT: Training Your Own Medical GPT Model with ChatGPT Training Pipeline. 训练医疗大模型，实现包括二次预训练、有监督微调、奖励建模、强化学习训练。
yirenheihei/pathml
Tools for computational pathology
yirenheihei/PMDM
yirenheihei/predector
Effector prediction pipeline based on protein properties.
yirenheihei/probflow
A Python package for building Bayesian models with TensorFlow or PyTorch
yirenheihei/protein-design-vae
Generative, unsupervised latent variable model for protein sequences
yirenheihei/python-wsi-preprocessing
Python Whole Slide Image Preprocessing
yirenheihei/qlib
Qlib is an AI-oriented quantitative investment platform that aims to realize the potential, empower research, and create value using AI technologies in quantitative investment, from exploring ideas to implementing productions. Qlib supports diverse machine learning modeling paradigms. including supervised learning, market dynamics modeling, and RL.
yirenheihei/Repo-2022
Python codes on PyTorch, Tensorflow, Keras, Wav2Vec2 Fine-Tuning and Google Cloud
yirenheihei/RESP
The code used to generate the results from Parkinson / Hard et al. 2022
yirenheihei/SurfGen
SurfGen: Learning on Topological Surface and Geometric Structure for 3D Molecular Generation
yirenheihei/udlbook
Understanding Deep Learning - Simon J.D. Prince