Pinned Repositories
A-Deep-Learning-Model-for-Predicting-Next-Generation-Sequencing-Depth-from-DNA-Sequence
A Deep Learning Model for Predicting Next-Generation Sequencing Depth from DNA Sequence
AGAPE
AGAPE (Automated Genome Analysis PipelinE) for yeast pan-genome analysis
airrflow
B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework
alphaflow
AlphaFold Meets Flow Matching for Generating Protein Ensembles
alphafold_non_docker
AlphaFold2 non-docker setup
Analysing-10X-ScRNA-data-Wang-et-al-2020-Nat-Commun-
I redo the ScRNA analysis in the paper of Wang et al 2020, Nat Comm. Here's my modified script for Helen He Zhu github (https://github.com/HelenHeZhu/StemCell)
asp_pan
Generating large pangenome for Aspergillus fumigatus
atac-seq-pipeline
ENCODE ATAC-seq pipeline
snakepipes
A toolkit based on snakemake and python for analysis of NGS data
yirenheihei's Repositories
yirenheihei/snakepipes
A toolkit based on snakemake and python for analysis of NGS data
yirenheihei/AGAPE
AGAPE (Automated Genome Analysis PipelinE) for yeast pan-genome analysis
yirenheihei/ATACseq
ATAC-seq analysis pipeline
yirenheihei/atacseq-1
ATAC-seq peak-calling, QC and differential analysis pipeline.
yirenheihei/Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
yirenheihei/awesome-machine-learning-cn
机器学习资源大全中文版,包括机器学习领域的框架、库以及软件
yirenheihei/awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
yirenheihei/cgat
Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps
yirenheihei/ChIP-seq-analysis
ChIP-seq analysis notes from Ming Tang
yirenheihei/chip-seq-pipeline2
yirenheihei/chipseq_pipeline
AQUAS TF and histone ChIP-seq pipeline
yirenheihei/Chloroplast-genome-assembly
A pipeline for assemble chroloplast genome using short/long reads
yirenheihei/CS-Books
📚 Computer Science Books 计算机技术类书籍 PDF
yirenheihei/deep-histopath
A deep learning approach to predicting breast tumor proliferation scores for the TUPAC16 challenge
yirenheihei/DeepLearningCourseCodes
Notes, Codes, and Tutorials for the Deep Learning Course <which I taught at ChinaHadoop>
yirenheihei/DeepNude-an-Image-to-Image-technology
DeepNude's algorithm and general image generation theory and practice research, including pix2pix, CycleGAN, UGATIT, DCGAN, and VAE models (TensorFlow2 implementation). DeepNude的算法以及通用GAN图像生成的理论与实践研究。
yirenheihei/dragonstar2019
yirenheihei/EpiDISH
This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representing a mixture of such cell-types. Inference proceeds via one of 3 methods (Robust Partial Correlations-RPC, Cibersort (CBS), Constrained Projection (CP)), as determined by user.
yirenheihei/fasta_GCN
使用图卷积对生物序列进行分类
yirenheihei/HTseq_2019
workshop content for HTseq 2019
yirenheihei/In-depth-NGS-Data-Analysis-Course
Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.
yirenheihei/lihang_book_algorithm
致力于将李航博士《统计学习方法》一书中所有算法实现一遍
yirenheihei/MachineLearning
Machine learning resources
yirenheihei/mlbop
Matlab code for S. Theodoridis' "Machine Learning: A Bayesian and Optimization Perspective" (2015).
yirenheihei/pigx_chipseq
Pipeline for Analysis of ChIP-Seq data
yirenheihei/protein-vae
Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies
yirenheihei/Scasat
Scasat is a single cell ATAC-seq preprocessing and analysis pipeline
yirenheihei/SingleR
SingleR: Single-cell RNA-seq cell types Recognition
yirenheihei/snvphyl-tools
Tools/scripts for the SNVPhyl whole genome phylogenomics pipeline
yirenheihei/ucsd-bioinformatics-2
Genome Sequencing (Bioinformatics II) by University of California, San Diego