YangLab@Northwestern

This repo stores the codes for Yang lab projects

Pinned Repositories

BINARY
BIoiNformatics Algorithms libRarY aka BINARY
Language:C++2 3 120
docker-images
docker-images
Language:Dockerfile1 2 00
genogrove
C++ Genomic Interval B+ Tree Library
Language:C++10
pxblat
PxBLAT: An Efficient and Ergonomic Python Binding Library for BLAT
Language:C17 2 180
ScanExitron
A computational workflow for exitron splicing identification
Language:Shell12 2 126
ScanExitronLR
A package for the characterization and quantification of exitron splicing events in long-read RNA-seq
Language:Python5 3 20
ScanITD
A python tool to detect internal tandem duplication with robust variant allele frequency estimation
Language:Rez9 2 83
ScanNeo
A pipeline for identifying indel derived neoantigens using RNA-Seq data
Language:Python28 3 197
ScanNeo2
Snakemake-based computational workflow for neoantigen prediction from diverse sources
Language:Python11 3 231
yanglab-guide
The repo contain content about yang's lab guide.
Language:Python2 2 12

ylab-hi/ScanNeo
A pipeline for identifying indel derived neoantigens using RNA-Seq data
Language:Python28 3 197
ylab-hi/pxblat
PxBLAT: An Efficient and Ergonomic Python Binding Library for BLAT
Language:C17 2 180
ylab-hi/ScanExitron
A computational workflow for exitron splicing identification
Language:Shell12 2 126
ylab-hi/ScanNeo2
Snakemake-based computational workflow for neoantigen prediction from diverse sources
Language:Python11 3 231
ylab-hi/ScanITD
A python tool to detect internal tandem duplication with robust variant allele frequency estimation
Language:Rez9 2 83
ylab-hi/ScanExitronLR
A package for the characterization and quantification of exitron splicing events in long-read RNA-seq
Language:Python5 3 20
ylab-hi/BINARY
BIoiNformatics Algorithms libRarY aka BINARY
Language:C++2 3 120
ylab-hi/yanglab-guide
The repo contain content about yang's lab guide.
Language:Python2 2 12
ylab-hi/docker-images
docker-images
Language:Dockerfile1 2 00
ylab-hi/genogrove
C++ Genomic Interval B+ Tree Library
Language:C++10
ylab-hi/kent
UCSC Genome Browser source tree. Stable branch: "beta".
Language:C0 0 00
ylab-hi/lncGSEA
An R package to identify lncRNA associated pathway
Language:R0 2 20
ylab-hi/pbsim2
PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores
Language:C++0 0 00
ylab-hi/ylab-hi.github.io
Official website for Yang Lab
Language:SCSS0 1 00