Pinned Repositories
bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
knowledgebase
recipes that save time
alphafold
Open source code for AlphaFold.
bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
crt
transcriptome analysis scripts (historically clinical research transcriptome)
geo_submissions_guideline
Guidelines for geo submissions.
Intro-to-ChIPseq
Intro to ChIPseq using HPC
ipenywis
Github Profile
self_study_2021_2022
Self studies.
yoonsquared
Config files for my GitHub profile.
yoonsquared's Repositories
yoonsquared/alphafold
Open source code for AlphaFold.
yoonsquared/bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
yoonsquared/crt
transcriptome analysis scripts (historically clinical research transcriptome)
yoonsquared/geo_submissions_guideline
Guidelines for geo submissions.
yoonsquared/Intro-to-ChIPseq
Intro to ChIPseq using HPC
yoonsquared/ipenywis
Github Profile
yoonsquared/self_study_2021_2022
Self studies.
yoonsquared/yoonsquared
Config files for my GitHub profile.
yoonsquared/Jupyter
yoonsquared/knowledgebase
General knowledge for HBC computing
yoonsquared/knowledgebase_image
yoonsquared/rayshader
R Package for 2D and 3D mapping and data visualization
yoonsquared/Review_of_scRNAseq_eric_chow
yoonsquared/scRNA-seq_online
yoonsquared/self_study_2023
Self study materials in 2023.
yoonsquared/shapemapper2
Public repository for ShapeMapper 2 releases
yoonsquared/Superfold
SuperFold is a pipeline that uses output data from ShapeMapper to model RNA secondary structures, including pseudoknots; identify de novo regions with well-defined and stable structures; and visualize most probable and alternative helices.