hbc/knowledgebase

Issues

• Question about pyscenic run time and memory usage, and potential updates to workflow?

  #130 opened 5 months ago by liezeltamon
  2

• Lightweight bcbioRNASeq

  #36 opened 5 years ago by roryk
  3

• Add a template for acknowledgements

  #69 opened 5 years ago by rkhetani
  3

• suggestion: useful references document

  #27 opened 6 years ago by jnhutchinson
  2

• resource showing different ways RNAseq and single cell RNAseq can fail

  #40 opened 5 years ago by jnhutchinson
  1

• Using htmlwidgets in R

  #64 opened 5 years ago by jnhutchinson
  2

• Add headers to all pages for future compatibility with HTML render framework

  #30 opened 5 years ago by lpantano
  0

• needs section describing changes to bcbio and other tools used by group

  #13 opened 5 years ago by jnhutchinson
  1

• Detecting strandedness in RNAseq from Salmon output

  #37 opened 5 years ago by jnhutchinson
  2

• how do I tell which genomes are installed in bcbio

  #16 opened 5 years ago by jnhutchinson
  3

• suggestion - section detailing different productivity tools (Alfred workflows, timer apps etc.)

  #15 opened 5 years ago by jnhutchinson
  1

• lpantano_knowledge

  #8 opened 5 years ago by lpantano
  1

• mistrm82_knowledge

  #5 opened 5 years ago by mistrm82
  0

• rkhetani_knowledge

  #4 opened 5 years ago by rkhetani
  0

• shosui_knowledge

  #3 opened 5 years ago by sjhosui
  0

• vbarrera_knowledge

  #1 opened 5 years ago by vbarrera
  0

• Feature: STAR 2-pass

  #26 opened 5 years ago by roryk
  0

• suggestion: useful R packages/utilities

  #29 opened 5 years ago by jnhutchinson
  1

• Methods for PacBio assembly

  #111 opened 5 years ago by mistrm82
  1

• add a lesson on GEO submissions

  #104 opened 5 years ago by mistrm82
  1

• Reduce time for single cell markers visualization

  #93 opened 6 years ago by lpantano
  1

• Documentation of how to access and work with our Shiny Server VM on HMS RC

  #65 opened 6 years ago by jnhutchinson
  0

• Set up documentation to migrate github to code.harvard

  #70 opened 6 years ago by lpantano
  1

• Example Cell Ranger load scripts

  #25 opened 6 years ago by mjsteinbaugh
  0

• single cell materials - tutorials, templates and scripts

  #73 opened 6 years ago by marypiper
  1

• add link to methods

  #71 opened 6 years ago by mistrm82
  1

• hutchinson_knowledge

  #2 opened 6 years ago by jnhutchinson
  0

• How to get access to and download data from dbGap

  #28 opened 6 years ago by sjhosui
  1

• Arranging multidimensional data along a 2d curve

  #23 opened 6 years ago by roryk
  1

• how do I run the new automated QC (via bcbioRNASeq) from bcbio

  #17 opened 6 years ago by jnhutchinson
  1

• migrate project set up document to md

  #6 opened 6 years ago by lpantano
  8

• bcbio to STREAM

  #52 opened 6 years ago by mjsteinbaugh
  0

• Installing a versioned bcbio release

  #51 opened 6 years ago by mjsteinbaugh
  2

• how to transfer raw data between universities

  #7 opened 6 years ago by lpantano
  5

• Spacemacs (emacs/vim) setup

  #22 opened 6 years ago by roryk
  6

• Tryout Alevin for single-cell counting

  #9 opened 6 years ago by roryk
  2

• snakemake template to run custom commands as workflow

  #11 opened 6 years ago by lpantano
  0

• Sort genomes in O2/Odyssey.

  #21 opened 6 years ago by vbarrera
  3

• Add contributors file

  #31 opened 6 years ago by lpantano
  1

• needs section describing download methods for major sequencing cores we deal with

  #14 opened 6 years ago by jnhutchinson
  2

• How to contribute an FAQ?

  #32 opened 6 years ago by mistrm82
  0

• IRFinder

  #10 opened 6 years ago by roryk
  0

• Add genome usage information

  #20 opened 6 years ago by vbarrera
  1

• normalized counts saved by bcbioRNAseq

  #12 opened 6 years ago by rkhetani
  0