Pinned Repositories
AQuA
An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data
AQuA2
Activity Quantification and Analysis for molecular spatiotemporal signals
BILCO
BIdirectional pushing with Linear Component Operations, an efficient algorithm for solving joint alignment problem
CINDA
Circulation Network based Data-association for Multi-object Tracking
CMC
A Conditional Multifactorial Contingency (CMC) model to jointly learn the multifactorial effect in large-scale data.
ConvexVST
A Convex Optimization Approach to Variance-stabilizing Transformation
muSSP
An exact and efficient min-cost flow algorithm for data-association in multi-object tracking
NIS3D
A Completely Annotated Benchmark for Dense 3D Nuclei Image Segmentation
PrinCut-Auto
an unsupervised automatic 3D cell detector and manual annotation assistant
SynQuant
A Fiji plugin that automatically quantify synapses from multi-channel fluorescence microscopy images.
yu-lab-vt's Repositories
yu-lab-vt/muSSP
An exact and efficient min-cost flow algorithm for data-association in multi-object tracking
yu-lab-vt/AQuA
An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data
yu-lab-vt/CINDA
Circulation Network based Data-association for Multi-object Tracking
yu-lab-vt/SynQuant
A Fiji plugin that automatically quantify synapses from multi-channel fluorescence microscopy images.
yu-lab-vt/AQuA2
Activity Quantification and Analysis for molecular spatiotemporal signals
yu-lab-vt/ConvexVST
A Convex Optimization Approach to Variance-stabilizing Transformation
yu-lab-vt/BILCO
BIdirectional pushing with Linear Component Operations, an efficient algorithm for solving joint alignment problem
yu-lab-vt/NIS3D
A Completely Annotated Benchmark for Dense 3D Nuclei Image Segmentation
yu-lab-vt/PrinCut-Auto
an unsupervised automatic 3D cell detector and manual annotation assistant
yu-lab-vt/CMC
A Conditional Multifactorial Contingency (CMC) model to jointly learn the multifactorial effect in large-scale data.
yu-lab-vt/FASP
Functional AStrocyte Phenotyping (FASP) is a Fiji plugin that automatically analyzes and characterizes the spatiotemporal functional status of astrocytes from time-lapse Ca2+ imaging data. FASP has been updated to analyze more complex data, especially in-vivo data. The new version is available upon request to Prof. Yu (yug@vt.edu).
yu-lab-vt/GTW
Graphical Time Warping
yu-lab-vt/Whole-VNC-Imaging-Analysis
A whole-VNC functional imaging data analysis framework
yu-lab-vt/AQuA-Fiji
AQuA Fiji plugin
yu-lab-vt/cpp-function-library
This repository is a library of frequently used cpp functions.
yu-lab-vt/AQuA2-Fiji
Fiji Implementation of AQuA2
yu-lab-vt/stardist
StarDist - Object Detection with Star-convex Shapes
yu-lab-vt/SynQuant-data
Data sets used in SynQuant paper