/AQuA2-Fiji

Fiji Implementation of AQuA2

Primary LanguageJavaGNU General Public License v3.0GPL-3.0

AQuA2 Fiji plugin

This is the site for the Fiji plugin of AQuA2. For details, please visit the main repository.

How to install:

Neccessary:

  1. Download the newest release .jar file from releases.
  2. Download three .jar files in "lib" folder
  3. Move "AQuA2.jar", "MorphoLibJ_-1.6.2.jar", "jdistlib-0.4.5.jar" files into "Fiji.app\plugins"

Optional:

  1. If there is a reminder "Need to update Jna lib" during use, replace "Fiji.app\jars\jna-x.x.x.jar" by "jna-jpms-5.13.0.jar"

  2. We have algorithms compiled into .dll files. Microsoft visual C++ is required, you may install it from here.

How to use:

In Fiji menu, select "Plugins -> AQuA2". Then everything would be similar to MATLAB GUI of AQuA2. For GUI instructions, please visit the main repository.

Update:

  • 2024-05-15: Fix the issue that cannot link .dll files

  • 2024-02-22: Synchronize the watershed function in both MATLAB and Fiji versions. Now thte results of two versions are the same.

  • 2024-01-18: Update files for Linux and Mac systems.