Pinned Repositories
2023_Talat_India-HWW
Data, code, and analyses for Talat & Blake et al. (2023). Microbiology Spectrum. PMID: 36786639.
AMRIWA
Data analysis for the HWW metagenomes from Benin, Burkina Faso and Finland (AMRIWA project)
ancientDNA
angelynlao.github.io
attack_amr
Source code for analysis of hospital wastewater metagenomic data
AuditingBiologicalML
BacteriophageHostPrediction
Code and database related to our manuscript "Predicting bacteriophage hosts based on receptor-binding proteins"
BayesImpute
a Bayesian imputation method for single-cell RNA-seq data
GuidedSparseKmeans
yupaulk.github.io
yupaulk's Repositories
yupaulk/GuidedSparseKmeans
yupaulk/yupaulk.github.io
yupaulk/ancientDNA
yupaulk/attack_amr
Source code for analysis of hospital wastewater metagenomic data
yupaulk/bioinfodlsu.github.io
Website of the Bioinformatics Lab at DLSU Manila
yupaulk/bioinformatics
:microscope: Path to a free self-taught education in Bioinformatics!
yupaulk/BMMB852
yupaulk/fido
Multinomial Logistic-Normal Models (really fast)
yupaulk/food-dbs
Repository used for creating/maintaining FoodSeq reference databases. Forked from Brianna Petrone's original repository.
yupaulk/gargammel
gargammel is an ancient DNA simulator
yupaulk/Gaussian-Process-Regression-Tutorial
An Intuitive Tutorial to Gaussian Processes Regression
yupaulk/getting-started-with-genomics-tools-and-resources
Unix, R and python tools for genomics and data science
yupaulk/GWA_tutorial
A comprehensive tutorial about GWAS and PRS
yupaulk/gwas-tutorial
This repository follows a tutorial on GWAS in Plink by math et al on Youtube
yupaulk/GWASTutorial
GWAS Tutorial for Beginners
yupaulk/ILD_eQTL
yupaulk/JOBS
yupaulk/LaplacesDemon
A complete environment for Bayesian inference within R
yupaulk/limix_qtl
yupaulk/mapDamage
mapDamage: tracking and quantifying damage patterns in ancient DNA sequences
yupaulk/mb-pipeline
Code for analyzing metabarcoding datasets
yupaulk/MultiAddGPs
Code for MultiAddGPs (Multinomial Logistic Normal Additive Gaussian Processes Model)
yupaulk/pml-book
"Probabilistic Machine Learning" - a book series by Kevin Murphy
yupaulk/project-template
yupaulk/python_workshop
yupaulk/reference_database_creator
creating reference databases for amplicon sequencing
yupaulk/RESCRIPt
REference Sequence annotation and CuRatIon Pipeline
yupaulk/skills-introduction-to-github
My clone repository
yupaulk/STAT511prject
group project for stat511
yupaulk/YACHT
A mathematically characterized hypothesis test for organism presence/absence in a metagenome