yuweibao15

yuweibao15's Stars

• chi-feng/mcmc-demo

  Interactive Markov-chain Monte Carlo Javascript demos

  Language:JavaScript838117

• stamatak/standard-RAxML

  Language:C337192

• amkozlov/raxml-ng

  RAxML Next Generation: faster, easier-to-use and more flexible

  Language:C++41163

• cortes-ciriano-lab/SComatic

  A tool for detecting somatic variants in single cell data

  Language:Python19329

• NYUMedML/CNN_design_for_AD

  Code for "Generalizable deep learning model for early Alzheimer’s disease detection from structural MRIs"

  Language:Jupyter Notebook15239

• lh3/wgsim

  Reads simulator

  Language:C27090

• nh13/DWGSIM

  Whole Genome Simulator for Next-Generation Sequencing

  Language:C9638

• yjx1217/simuG

  simuG: a general-purpose genome simulator

  Language:Perl9212

• zstephens/neat-genreads

  NEAT read simulation tools

  Language:Python9827

• galaxy001/pirs

  profile basd Illumina pair-end Reads Simulator

  Language:C++277

• CMPS-6100/notebooks

  This repository contains the interactive readings for CMPS 6100.

  Language:Jupyter Notebook211

• fchollet/deep-learning-with-python-notebooks

  Jupyter notebooks for the code samples of the book "Deep Learning with Python"

  Language:Jupyter Notebook19k8.8k

• griffithlab/pmbio.org

  Website for the precision medicine workshop

  Language:SCSS4522

• zabore/tutorials

  Language:HTML7457

• louisfb01/start-machine-learning

  A complete guide to start and improve in machine learning (ML), artificial intelligence (AI) in 2025 without ANY background in the field and stay up-to-date with the latest news and state-of-the-art techniques!

  4.7k608

• CompEpigen/figeno

  Tool for plotting sequencing data along genomic coordinates.

  Language:Python2598

• UMCUGenetics/MutationalPatterns

  R package for extracting and visualizing mutational patterns in base substitution catalogues

  Language:R10645

• tomh1lll/dudeml

  detection of duplications and deletions using Python based machine learning techniques

  Language:Python284

• cran/coda

  :exclamation: This is a read-only mirror of the CRAN R package repository. coda — Output Analysis and Diagnostics for MCMC

  Language:R68

• BoevaLab/SV-Bay

  Detection of structural variants in cancer mate-pair and paired-end data

  Language:Python122

• BoevaLab/ONCOCNV

  ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq data

  Language:R2512

• BoevaLab/FREEC

  Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data

  Language:C++15750

• PacificBiosciences/pbmm2

  A minimap2 frontend for PacBio native data formats

  Language:Raku18632

• PacificBiosciences/pbsv

  pbsv - PacBio structural variant (SV) calling and analysis tools

  Language:Python13824

• DerKevinRiehl/transposon_annotation_reasonaTE

  Transposon annotation tool "resonaTE" (part of TransposonUltimate)

  Language:Python161

• DerKevinRiehl/transposition_detector_deTEct

  Transposition event detection tool using NGS alignment data and SV calling outputs (VCF files) from PBSV or Sniffles

  Language:Python7

• DerKevinRiehl/TransposonUltimate

  TransposonUltimate - a holistic set of tools for transposon identification

  845

• clemgoub/dnaPT_utils

  A collection of scripts to perform several downstream analyses with dnaPipeTE 1.3

  Language:Shell61

• clemgoub/dnaPipeTE

  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in small samples of NGS datasets. It is very useful to quantify the proportion of TEs in newly sequenced genomes since it does not require genome assembly and works on small datasets (< 1X).

  Language:Dockerfile5411

• mhammell-laboratory/TEtranscripts

  A package for including transposable elements in differential enrichment analysis of sequencing datasets.

  Language:Python24431