yz42

yz42's Stars

• josephryan/alien_index

  identify potential non-animal transcripts in animal transcriptomes

  Language:Perl113

• xie186/ViewBS

  ViewBS - a powerful toolkit for visualization of high-throughput bisulfite sequencing data

  Language:Perl8127

• eggnogdb/eggnog-mapper

  Fast genome-wide functional annotation through orthology assignment

  Language:Python556105

• tjunier/newick_utils

  shell tools for processing phylogenetic trees

  Language:C10031

• pedronachtigall/CodAn

  CDS prediction in transcripts

  Language:Python194

• fanagislab/kmerfreq

  kmerfreq count K-mer (with size K) frequency from the input sequence data, typically sequencing reads data, and refe rence genome data is also applicable. Kmerferq output file can be used as input file of either version of GCE (Genomic character estimator).

  Language:C++155

• DRL/blobtools-light

  Light version blobtools package - NO LONGER MAINTAINED! DO NOT USE!

  Language:Python88

• Gaius-Augustus/TSEBRA

  TSEBRA: Transcript Selector for BRAKER

  Language:Python455

• ellenbell/FasTE

  A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotator (EDTA), DeepTE, RepeatMasker and RM_TRIPS.

  Language:R261

• oushujun/EDTA

  Extensive de-novo TE Annotator

  Language:Perl33172

• Xu-lab-Evolution/Great_duckweed_popg

  The repository archives scripts involved in the great duckweed (Spirodela polyrhiza) population genomics project.

  Language:Perl1

• edgardomortiz/vcf2phylip

  Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis

  Language:Python28484

• Gaius-Augustus/BRAKER

  BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes

  Language:Perl34779

• dibrale/samist

  Segment Anything Model (SAM) Image Segmentation Tool - SAMIST. Python GUI for image segmentation using SAM by Meta AI.

  Language:Python22912

• ruanyf/weekly

  科技爱好者周刊，每周五发布

  45k2.8k

• shenglin-liu/vcf2sfs

  R functions for generating site frequency spectra (SFS) from a VCF file.

  Language:R268

• hemstrow/snpR

  Language:R257

• lixiang117423/qPCRtools

  Language:R175

• bekirsch/HaploBlocks

  This repo contains HaploBlocks, an efficient tool for selection scans on popgen datasets.

  Language:C++7

• okibcn/wslcompact

  Compacts the size of the ever-growing WSL vhdx images.

  Language:PowerShell72718

• fengcong3/HAPPE

  A tool to visualize the haplotype pattern and various information in excel.

  Language:Python18

• whweve/IntAssoPlot

  Language:R159

• openai/DALL-E

  PyTorch package for the discrete VAE used for DALL·E.

  Language:Python10.8k1.9k

• RitataLU/MethylC-analyzer

  Language:Python114

• xiaolei-lab/rMVP

  :postbox: A Memory-efficient, Visualization-enhanced, and Parallel-accelerated Tool For Genome-Wide Association Study

  Language:R26269

• genetics-statistics/GEMMA

  Genome-wide Efficient Mixed Model Association

  Language:C++325124

• frankvogt/vcf2gwas

  Python API for comprehensive GWAS analysis using GEMMA

  Language:Python8429

• brentp/vcfanno

  annotate a VCF with other VCFs/BEDs/tabixed files

  Language:Go35755

• samtools/bcftools

  This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html

  Language:C649240

• BGI-shenzhen/VCF2Dis

  VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Format

  Language:C++7320