Pinned Repositories
actigraphy
Feature extraction from minute level actigraphy data
awesome-deep-learning
A curated list of awesome Deep Learning tutorials, projects and communities.
awesome-deepbio
A curated list of awesome deep learning applications in the field of computational biology
bcbb
Incubator for useful bioinformatics code, primarily in Python and R
bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
bigPint
Analysis and scripts for Google Summer of Code project.
BiobankRead
Python for UK Biobank data analysis
Blockchain-stuff
Blockchain and Crytocurrency Resources
ctDNA_WES_pipeline
Pipeline for analysing data from whole-exome sequencing (WES) of circulating tumour DNA (ctDNA)
WGBS-cfDNA
Scripts for the alignment and analysis of whole genome bisulfite sequencing data from cell-free DNA
yzharold's Repositories
yzharold/actigraphy
Feature extraction from minute level actigraphy data
yzharold/awesome-deep-learning
A curated list of awesome Deep Learning tutorials, projects and communities.
yzharold/bcbb
Incubator for useful bioinformatics code, primarily in Python and R
yzharold/bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
yzharold/bigPint
Analysis and scripts for Google Summer of Code project.
yzharold/cdHOTS
Construct and decompose higher order tensorian statistics
yzharold/ctrl
Conditional Transformer Language Model for Controllable Generation
yzharold/DeepLearning
深度学习入门教程&&优秀文章&&Deep Learning Tutorial
yzharold/deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
yzharold/DeepVariant-GLnexus-WDL
WDL workflow for population variant calling using htsget, DeepVariant, and GLnexus
yzharold/dream_analysis
Simulation and data analysis code for dream paper
yzharold/dxda
CLI tool to manage the download of large quantities of files from DNAnexus
yzharold/fatdistnGWAS
Code and data related to the meta-analysis of fat distribution in UK Biobank and GIANT
yzharold/GeneModuleAnnotation
yzharold/GLnexus
Scalable gVCF merging and joint variant calling for population sequencing projects
yzharold/GSVA
Gene set variation analysis for microarray and RNA-seq data
yzharold/GWA_tutorial
A comprehensive tutorial about GWAS and PRS
yzharold/JAMI
Java tool for computing conditional mutual information from large datasets
yzharold/ldpred
yzharold/loftee
yzharold/loon.micromaps
Interactive Micromaps in R with loon
yzharold/peakplotter
A tool to find and annotate signals in next-generation association studies
yzharold/PHESANT
PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank
yzharold/plotly
An interactive graphing library for R
yzharold/RNA-seq-analysis
RNAseq analysis notes from Ming Tang
yzharold/rnaseqscripts
yzharold/rpharma-demo
yzharold/shiny
Easy interactive web applications with R
yzharold/solvebio-python
SolveBio Python bindings
yzharold/variantkey
64 bit Encoding for Human Genetic Variants