Pinned Repositories
actigraphy
Feature extraction from minute level actigraphy data
awesome-deep-learning
A curated list of awesome Deep Learning tutorials, projects and communities.
awesome-deepbio
A curated list of awesome deep learning applications in the field of computational biology
bcbb
Incubator for useful bioinformatics code, primarily in Python and R
bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
bigPint
Analysis and scripts for Google Summer of Code project.
BiobankRead
Python for UK Biobank data analysis
Blockchain-stuff
Blockchain and Crytocurrency Resources
ctDNA_WES_pipeline
Pipeline for analysing data from whole-exome sequencing (WES) of circulating tumour DNA (ctDNA)
WGBS-cfDNA
Scripts for the alignment and analysis of whole genome bisulfite sequencing data from cell-free DNA
yzharold's Repositories
yzharold/Essay-Grading
This project was completely based on NLP and text mining. I used R to find many features from text data and train model on them using ML.
yzharold/msg-extractor
Extracts emails and attachments saved in Microsoft Outlook's .msg files
yzharold/FaST-LMM
Python version of Factored Spectrally Transformed Linear Mixed Models
yzharold/text2vec
:exclamation: This is a read-only mirror of the CRAN R package repository. text2vec — Modern Text Mining Framework for R. Homepage: http://text2vec.org Report bugs for this package: https://github.com/dselivanov/text2vec/issues
yzharold/Text-Mining-Recommendation-System
Text Mining Code in R and Matlab to build a recommendation system
yzharold/cfDNA
Analysis of epigenetic signals captured by fragmentation patterns of cell-free DNA
yzharold/jeffheaton-book-code
Source code from my older (pre Artificial Intelligence for Humans books) books. I am no longer updating these older editions.
yzharold/GoodReads_TextMining
Webscraping and analyzing book reviews on GoodReads
yzharold/fasta_File_Manipulation
yzharold/LB-Seq
Liquid Biopsy Sequencing analysis tools for cell free DNA sequencing
yzharold/CfdnaPattern
Pattern Recognition for Cell-free DNA
yzharold/NYT-Movie-Reviews
Natural language processing and text classification using NYT movie reviews gathered from API and website mining.
yzharold/xwas
X-Wide Association Analyses
yzharold/sailfish
Rapid Mapping-based Isoform Quantification from RNA-Seq Reads
yzharold/MachineLearning
yzharold/pathogenicity
The evaluation of tools used to predict the impact of missense mutations is hindered by two types of circularity
yzharold/hgvs
HGVS variant name parsing and generation
yzharold/R-Study-Lists
yzharold/sscm
Semi-Supervised Clustering of Mutations
yzharold/ctDNASomaticVariantCall.jl
Somatic Variant Call for ctDNA
yzharold/odsc_meetup_text_processing
Example code from ODSC Meetup presentation on Text Mining with R, Python, & Spark
yzharold/ctdna_papers
papers collections of cancer detected from plasma
yzharold/qvalue
R package to estimates q-values and false discovery rate quantities.
yzharold/gvcf2vcf
Convert gVCF to VCF
yzharold/cmDetect
ctDNA mutation detection workflow
yzharold/reading
A collection of papers and books that Storey Lab members should read and others may find useful
yzharold/rfun
Simple Utility providing CLI access to all R functions
yzharold/Text-Mining-Weak-Signals
This is a collection of mostly R code to use text mining to analyse conference abstracts, blogs and other sources in an attempt to look for "weak signals" (early signs of new trends), See the wiki pages for background etc.
yzharold/TextMiningInR
Sample text mining procedures in R
yzharold/learning-spark-examples
Examples for learning spark