Pinned Repositories
atac-seq-standard-pipeline
workflow for standard ATAC-seq data analysis
bioinformatics
Script for bioinformatics analysis
bootcamp-central
PSU bootcamp on reproducible research
bpnet
Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them
chip-seq-standard-pipeline
workflow for standard ChIP-seq data analysis
chiptoolkit
Tool kit for chip-seq like data analysis
rna-seq-star-deseq2
RNA-seq workflow using STAR and DESeq2
seqcode-core
SeqCode: Java code for the analysis of high-throughput sequencing data
snakemake-pipeline-general
General rules could be used for specific purpose
Snakemake_workshop
Example code for snakemake workshop
yztxwd's Repositories
yztxwd/snakemake-pipeline-general
General rules could be used for specific purpose
yztxwd/Snakemake_workshop
Example code for snakemake workshop
yztxwd/bioinformatics
Script for bioinformatics analysis
yztxwd/rna-seq-star-deseq2
RNA-seq workflow using STAR and DESeq2
yztxwd/seqcode-core
SeqCode: Java code for the analysis of high-throughput sequencing data
yztxwd/atac-seq-standard-pipeline
workflow for standard ATAC-seq data analysis
yztxwd/bootcamp-central
PSU bootcamp on reproducible research
yztxwd/bpnet
Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them
yztxwd/chip-seq-standard-pipeline
workflow for standard ChIP-seq data analysis
yztxwd/chiptoolkit
Tool kit for chip-seq like data analysis
yztxwd/configs
Custom config files for various tools (vim, zsh, alacritty...)
yztxwd/cplate
Digestion template-based deconvolution for chromatin structure inference.
yztxwd/dbyll
Stylish, minimalistic theme for jekyll.
yztxwd/dna-methylation-pipeline
Applied on TAB-seq, BS-seq, and other DNA methylation libraries
yztxwd/DreamChallenge
Scripts for Dream Challenge
yztxwd/FGO-Automata
一个简单的FGO脚本和API
yztxwd/mediumish-theme-jekyll
Jekyll Template - Mediumish
yztxwd/MNase-seq-workflow
A standard workflow on preprocessing MNase-seq data
yztxwd/pbs-torque
yztxwd/pytorch-domain-adaptation
A collection of implementations of adversarial domain adaptation algorithms
yztxwd/redpill-tool-chain
这是一个测试项目，可能会有不可预测的事情发生（比如：毁损数据、烧毁硬件等等），请谨慎使用。
yztxwd/rna-seq-standard-pipeline
standard RNA-seq analysis pipeline (cloned from snakemake example workflow)
yztxwd/S3V2_IDEAS_ESMP
S3norm ver2 + IDEAS epigenetic state / master peak list
yztxwd/sampleproject
A sample project that exists for PyPUG's "Tutorial on Packaging and Distributing Projects"
yztxwd/snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
yztxwd/styles
Official repository for Citation Style Language (CSL) citation styles.
yztxwd/tfmodisco-lite-for-Fox
A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.
yztxwd/torchmetrics
Torchmetrics - Machine learning metrics for distributed, scalable PyTorch applications.
yztxwd/voice_to_speech
Transcribe an audio file into text, then summarize
yztxwd/yztxwd.github.io
A minimalist Jekyll theme for running a personal blog