/phylogeo

Mapping for Phyloseq

Primary LanguageR

####Geographic Mapping of Ecological Datasets

The phylogeo package is intented to allow the rapid geographic exploration of [phyloseq] (https://github.com/joey711/phyloseq) objects. The package currently only has five major:

  • map_phyloseq()
  • map_network()
  • map_tree()
  • map_clusters()
  • plot_distance()

To learn more about useage, please see the documentation

To install, phyloseq must be first be installed. phylogeo can then be installed using devtools:

install.packages("devtools")
library("devtools")
install_github("zachcp/phylogeo")

Maps like this one can be made with phyloseq-geo ExampleMap