Pinned Repositories
cdkr
Integrating R and the CDK
depict
depict package for drawing molecules in R
bioinformaticstoolkit
Build and deploy cross platform bioinformatic utilities with Rust.
chemdoodle
htmlwidgets for chemdoodle web components
ferritin
protein utilities in Rust
msaR
The BioJS MSA viewer wrapped into an R package
phylocanvas
htmlwidgets for phylocanvas
plm-local
run protein language models locally
quickD3map
Generate quick d3 maps from location data in pandas
simplecomponent
a simple component to show use of D3 from Reagent
zachcp's Repositories
zachcp/ggrepel
:round_pushpin: Repel overlapping text labels away from each other.
zachcp/JEBL
A Java library for evolutionary biology and bioinformatics, including objects representing biomolecular sequences, multiple sequence alignments and phylogenetic trees.
zachcp/phyloseq-tools
zachcp/primitive
clojure clone of primitive
zachcp/archaeopteryx-js
Html-Widget wrapper for archaeopteryx.js
zachcp/augur
Pipeline components for real-time virus analysis
zachcp/db-api
REST API for the antiSMASH database
zachcp/db-import
antiSMASH DB importer
zachcp/db-ui
A web UI for the antiSMASH database
zachcp/depict-clj
small clojure interface to CDK's depict
zachcp/developments-in-next-generation-sequencing
Developments in next generation sequencing: instruments, read lengths, throughput. See
zachcp/drat
Zach's drat repository
zachcp/enviGCMS
GC/LC-MS data analysis for environmental science
zachcp/figtree
Automatically exported from code.google.com/p/figtree
zachcp/htmlwidgetsgallery
zachcp/jam-lib
Automatically exported from code.google.com/p/jam-lib
zachcp/kekule
R htmlwidget for Kekule.js
zachcp/mibig-datamaps
Sandbox for Exploring Mibig with Datalog
zachcp/mibig-json-pics
Graphvized Mibig
zachcp/mibig-tools
Some helper functions for processing mibig json and gbk
zachcp/MibigDomainData
Nucelotide sequences for Mibig protein domains defined by the PFAM-A hmms
zachcp/paired-end-debarcoder
moved to https://github.com/esnapd/paired-end-debarcoder
zachcp/PFAM-protein-data
Mapping Between PFAM and Uniprot IDs
zachcp/phyloseq
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
zachcp/phyloTree
interactive phylogenetic tree viewer
zachcp/prokka
:zap: :aquarius: Rapid prokaryotic genome annotation
zachcp/pysvg-py3-feedstock
A conda-smithy repository for pysvg-py3.
zachcp/qiime-tools
utilities for Qiime workflows
zachcp/quickd3maps-R
create maps with D3.js
zachcp/ve-sequence-parsers
Convert genbank, fasta, sbol to JSON and back again!