zcang

zcang's Stars

• tanghaibao/goatools

  Python library to handle Gene Ontology (GO) terms

  Language:Python80523214211

• bruel-gabrielsson/TopologyLayer

  A Topology Layer for Machine Learning : Persistent Homology + Features for PyTorch

  Language:Python383123078

• OmicsML/dance

  DANCE: a deep learning library and benchmark platform for single-cell analysis

  Language:Python35464237

• theislab/scarches

  Reference mapping for single-cell genomics

  Language:Jupyter Notebook3511217753

• theislab/scib

  Benchmarking analysis of data integration tools

  Language:Python3321318765

• statOmics/tradeSeq

  TRAjectory-based Differential Expression analysis for SEQuencing data

  Language:HTML247725429

• changwxx/Awesome-Optimal-Transport-in-Deep-Learning

  a collection of AWESOME things about Optimal Transport in Deep Learning

  2384024

• lrnzgiusti/awesome-topological-deep-learning

  A curated list of topological deep learning (TDL) resources and links.

  23314013

• netsiphd/netrd

  A library for network {reconstruction, distances, dynamics}

  Language:Python167109843

• HuXiaoling/TopoLoss

  Code for the NeurIPS 2019 paper: Topology-Preserving Deep Image Segmentation

  Language:C++16452824

• mdozmorov/scHiC_notes

  Notes on single-cell Hi-C technologies, tools, and data

  76319

• rsinghlab/SCOT

  Gromov-Wasserstein based optimal transport for aligning single-cell multi-omics data

  Language:Jupyter Notebook6831217

• cantinilab/momix-notebook

  Language:Jupyter Notebook648611

• JCBrouwer/OptimalTextures

  An implementation of "Optimal Textures: Fast and Robust Texture Synthesis and Style Transfer through Optimal Transport"

  Language:Python501410

• thibsej/unbalanced_gromov_wasserstein

  Implementation of the Gromov-Wasserstein distance to the setting of Unbalanced Optimal Transport

  Language:Jupyter Notebook444412

• Hermina/GOT

  Code accompanying the NeurIPS 2019 paper "GOT: An Optimal Transport framework for Graph comparison"

  Language:Jupyter Notebook40314

• multitalk/awesome-cell-cell-communication

  Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics

  Language:Jupyter Notebook34206

• theislab/scArches-reproducibility

  Reproducing result from the paper

  Language:Jupyter Notebook33490

• necludov/wl-mechanics

  Language:Jupyter Notebook31101

• caokai1073/Pamona

  The software of Pamona, a partial manifold alignment algorithm.

  Language:Jupyter Notebook19143

• MathieuCarriere/difftda

  Persistence differentiation with Gudhi and Tensorflow

  Language:Jupyter Notebook18422

• cscarv/riemannian-metric-learning-ot

  Language:Jupyter Notebook17103

• madhavmantri/chicken_heart

  Spatiotemporal single-cell RNA sequencing of developing hearts reveals interplay between cellular differentiation and morphogenesis

  Language:R14276

• robinvndaele/topembedding

  Language:HTML12200

• SunXQlab/ESICCC

  ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods

  Language:R12211

• KamenB/neural-ode-tutorial

  Repository for tutorial on Neural ODEs prepared for the UCL AI Society

  Language:Jupyter Notebook6118

• LewisLabUCSD/Celegans-cell2cell

  Analyses for cell-cell interactions in C. elegans

  Language:Jupyter Notebook6212

• mputhawala/unnormalized-optimal-transport

  A repository containing code for computing the unnormalized wasserstein distance.

  Language:C++5303

• JonasLukasczyk/lts-sample-code

  Language:C++1100

• yenchic/Morse_Smale

  Source code for the paper "Statistical Inference using the Morse-Smale Complex"

  Language:R1200