/SPT_analysis

Primary LanguageJupyter NotebookMIT LicenseMIT

Single Particle Tracking analysis

This repository contains the code used in the study here

There are different pipelines present:

  • Spot detection and tracking

  • Mean square displacement analysis

  • dual color imaging analysis

The source code is contained in the folder source

To run each pipelines, bash scripts are provided within bin folder

The streamlit folder contains the application that can be used to navigate the analysed data

More detailed README (working in progress)