zhilizheng
A researcher in medicine and genetics. A doctor specialized in ophthalmolgy and optometry. A programmer likes to solve problem.
FinnGen, Broad InstituteBoston
Pinned Repositories
autoreporting
cmake-modules
CMake module collection
coloc.susie
cromwell
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
cxxopts
Lightweight C++ command line option parser
demo_code
expTools
Docker tools for cloud, tools in R and Python
plink-ng
Fork for Pgen library. Only patches for library uses, nothing new. Please refer to plink-ng repository
qsubshcom
qsub command for serveral cluster engine
SBayesRC
zhilizheng's Repositories
zhilizheng/SBayesRC
zhilizheng/qsubshcom
qsub command for serveral cluster engine
zhilizheng/coloc.susie
zhilizheng/plink-ng
Fork for Pgen library. Only patches for library uses, nothing new. Please refer to plink-ng repository
zhilizheng/autoreporting
zhilizheng/cmake-modules
CMake module collection
zhilizheng/cromwell
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
zhilizheng/cxxopts
Lightweight C++ command line option parser
zhilizheng/demo_code
zhilizheng/expTools
Docker tools for cloud, tools in R and Python
zhilizheng/finemapping-pipeline
Statistical fine-mapping pipeline in FinnGen
zhilizheng/gdriveupload
A command line utility for interacting with Google Drive and Team Drive
zhilizheng/gruvbox
Retro groove color scheme for Vim
zhilizheng/gtest-cmake-example
A sample project using GoogleTest with CMake
zhilizheng/gwasMP
zhilizheng/hamming_weight
C library to compute the Hamming weight of arrays
zhilizheng/hdf5Convert
A program to transfer in house hdf5 data
zhilizheng/impute-pipe
:shower: Canonical SGE cluster genotype imputation pipeline
zhilizheng/iswasmfast
Performance comparison of WebAssembly, C++ Addon, and native implementations of various algorithms in Node.js.
zhilizheng/joint-calling
Sample and variant QC, based on https://github.com/broadinstitute/gnomad_qc
zhilizheng/jquery.tocify.js
A jQuery Table of Contents plugin that can be themed with Twitter Bootstrap or jQueryUI.
zhilizheng/LDpred-funct
Here we develop the software for the method LDpredfunct described in https://www.biorxiv.org/content/early/2018/07/24/375337
zhilizheng/libpopcnt
🚀 Fast C/C++ bit population count library
zhilizheng/llvm-utils
LLVM/Clang for Visual Studio 2019, 2017, 2015, 2013, 2012 and 2010. Utils for Clang Static Analyzer
zhilizheng/mrfDepth
:exclamation: This is a read-only mirror of the CRAN R package repository. mrfDepth — Depth Measures in Multivariate, Regression and Functional Settings. Homepage: https://github.com/PSegaert/mrfDepth Report bugs for this package: https://github.com/PSegaert/mrfDepth/issues
zhilizheng/mRnd
Power calculations for Mendelian Randomisation
zhilizheng/open-in-buttons-for-finder-toolbar
Open in TextMate, open in VS Code buttons for Finder toolbar
zhilizheng/pheweb
A tool to build multi-phenotype GWAS browsers
zhilizheng/polyfun
PolyFun (POLYgenic FUNctionally-informed fine-mapping)
zhilizheng/sisg_mcmc_course
Lecture notes for Eric Anderson and Matthew Stephens SISG course on MCMC for Statistical Genetics