Error: File '*_tmp.sscore' does not esist or is non-readable

[alisonrocco]

Hi,

I am getting the following error when trying to run SBayesRC::prs()

Error: File 'PRS_Results_ImputedPanel_tmp.sscore' does not exist or is non-readable.
Execution halted.

I am left with the following files in my working directory:
PRS_Results_ImputedPanel_tmp.snplist
PRS_Results_ImputedPanel_tmp.nosex
PRS_Results_ImputedPanel_tmp.profile
PRS_Results_ImputedPanel_tmp.log

There are no errors present in the *_tmp.log file. This step seems to have completed successfully with high variant retention.

I am running the program using one genotype file containing all chromosomes and setting genoCHR=""

Please let me know if you have any idea what might be causing this error or how to resolve it.

Sincerely,
Alison

[zhilizheng]

Hi @alisonrocco ,

Thanks for the report, this is because your plink is the plink1.9, not the plink2.0 alpha. So, you have the *.profile. Pass the path of plink2 with parameter tool='plink2_YOUR_PATH', or set the plink2 in your path to the plink2 alpha.

Regards,
Zhili

[alisonrocco]

Hi @zhilizheng ,

Thank you so much! That resolved the issue