How can I cite biscuit as a reference in my paper?

[lijinbella]

Sorry I didn't find Biscuit paper in Pubmed and please tell me which paper to cite. Thanks!

[zwdzwd]

Unfortunately, it's currently still unpublished...

[lijinbella]

Sad. When will it be published in your prediction?
or...Can I just put the website https://github.com/zwdzwd/biscuit in the paper?

[zwdzwd]

That would probably be the best way right now. We are pushing it now. but it's hard to predict when it comes to publication :-(

[tantrev]

On that note, is Biscuit a "three-base" or "four-base" aligner? I only ask because I've noticed bwa-meth, a three-base aligner, seems to be ~3x faster than Biscuit.

[chrisamiller]

Have you considered posting a preprint to bioRxiv, which would allow you to accumulate citations and credit in the meantime? http://biorxiv.org/

[lijinbella]

Hello again! Thank you for replying me the question before. And I want to ask you another question in Biscuit usage. When I use Biscuit asm to call allele specific methylation, it shows : ~/biscuit asm outepiread_sort > outasm biscuit: src/asm_pairwise.c:122: main_asm: Assertion `strlen(in->fields[4]) == 1' failed. Aborted (core dumped) I want to know if I make mistakes before? Because it works well always before this step. Thank you very much! Best wishes! Jin Li 2017-09-20 lijinbella 发件人：Wanding Zhou - Bioinformatics <notifications@github.com> 发送时间：2017-05-16 08:48 主题：Re: [zwdzwd/biscuit] How can I cite biscuit as a reference in my paper? (#19) 收件人："zwdzwd/biscuit"<biscuit@noreply.github.com> 抄送："lijinbella"<lijinbella@163.com>,"Author"<author@noreply.github.com> That would probably be the best way right now. We are pushing it now. but it's hard to predict when it comes to publication :-( — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub, or mute the thread.