Pinned Repositories
AnnotSV
Annotation and Ranking of Structural Variation
cnvkit
Copy number variant detection from targeted DNA sequencing
deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
dockstore-cgpwgs
Dockstore implementation of CGP core WGS analysis
GO_prediction_ML
Gene Ontology Prediction Using Machine Learning Methods
GPU_mapping
Parallel short read mapping using CUDA
hello-github-actions
playground
An irrelevant project where I keep various code I wrote while learning
scalable-NGS
Scalable NGS pipeline implemented in Spark environment
seqTools
Program for searching target sequences and analyze genes based on number of sequence matches
zhouyangyu's Repositories
zhouyangyu/scalable-NGS
Scalable NGS pipeline implemented in Spark environment
zhouyangyu/AnnotSV
Annotation and Ranking of Structural Variation
zhouyangyu/cnvkit
Copy number variant detection from targeted DNA sequencing
zhouyangyu/deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
zhouyangyu/dockstore-cgpwgs
Dockstore implementation of CGP core WGS analysis
zhouyangyu/GO_prediction_ML
Gene Ontology Prediction Using Machine Learning Methods
zhouyangyu/GPU_mapping
Parallel short read mapping using CUDA
zhouyangyu/hello-github-actions
zhouyangyu/playground
An irrelevant project where I keep various code I wrote while learning
zhouyangyu/seqTools
Program for searching target sequences and analyze genes based on number of sequence matches
zhouyangyu/THetA
Tumor Heterogeneity Analysis (THetA) and THetA2 are algorithms that estimate the tumor purity and clonal/subclonal copy number aberrations directly from high-throughput DNA sequencing data. This repository includes the updated algorithm, called THetA2.
zhouyangyu/toil_container
:whale: A python package with container support for Toil pipelines.
zhouyangyu/YikYakTerminal
Python Yik Yak Command Line + YakMining + CSV keyword search = Happy College IT
zhouyangyu/zhouyangyu.github.io