ziyuanzhao2000

ziyuanzhao2000's Stars

• dask/dask-tutorial

  Dask tutorial

  Language:Jupyter Notebook1.8k708

• clementfarabet/manifold

  A package to manipulate manifolds.

  Language:Lua14131

• cwlkr/torchvahadane

  Gpu accelerated vahadane stain normalization for Digital Pathology workflows.

  Language:Python203

• mahmoodlab/UNI

  Towards a general-purpose foundation model for computational pathology - Nature Medicine

  Language:Jupyter Notebook35349

• TissueImageAnalytics/tiatoolbox

  Computational Pathology Toolbox developed by TIA Centre, University of Warwick.

  Language:Python38982

• mmtsb/toolset

  MMTSB Tool Set

  Language:Perl3013

• KULL-Centre/_2024_Cao_CALVADOSCOM

  Language:Jupyter Notebook101

• labsyspharm/cylinter-paper

  Language:Jupyter Notebook1

• baker-laboratory/RoseTTAFold-All-Atom

  Language:Python654118

• karpathy/minGPT

  A minimal PyTorch re-implementation of the OpenAI GPT (Generative Pretrained Transformer) training

  Language:Python20.3k2.5k

• nlp-with-transformers/notebooks

  Jupyter notebooks for the Natural Language Processing with Transformers book

  Language:Jupyter Notebook3.9k1.2k

• harmslab/pdbtools

  A set of tools for manipulating and doing calculations on wwPDB macromolecule structure files

  Language:Python17265

• LSSI-ETH/meta-learning-for-protein-engineering

  Meta learning addresses noisy and under-labeled data in machine learning-guided antibody engineering (https://doi.org/10.1016/j.cels.2023.12.003)

  Language:Python193

• BioComputingUP/AlphaFold-disorder

  Predict disorder and disorder binding from AlphaFold structures

  Language:Python144

• ZhangGroup-MITChemistry/OpenABC

  OpenMM implementation of MOFF, MRG-CG, and HPS models.

  Language:Python256

• RosettaCommons/RoseTTAFold

  This package contains deep learning models and related scripts for RoseTTAFold

  Language:Python2k440

• coqui-ai/TTS-papers

  🐸 collection of TTS papers

  64668

• coqui-ai/TTS

  🐸💬 - a deep learning toolkit for Text-to-Speech, battle-tested in research and production

  Language:Python35.8k4.4k

• molstar/molstar

  A comprehensive macromolecular library

  Language:TypeScript675152

• nrbennet/dl_binder_design

  Language:Python25261

• RosettaCommons/RFdiffusion

  Code for running RFdiffusion

  Language:Python1.8k352

• sokrypton/ColabFold

  Making Protein folding accessible to all!

  Language:Jupyter Notebook2k504

• sokrypton/ColabDesign

  Making Protein Design accessible to all via Google Colab!

  Language:Python635149

• ljcolson/Slurm-Protein-Design

  Setting up and running RFdiffusion on Slurm based computer clusters

  Language:Shell11

• qubvel-org/segmentation_models.pytorch

  Semantic segmentation models with 500+ pretrained convolutional and transformer-based backbones.

  Language:Python9.8k1.7k

• facebookresearch/esm

  Evolutionary Scale Modeling (esm): Pretrained language models for proteins

  Language:Python3.3k644

• labsyspharm/cylinter

  An Interactive Image Segmentation Filter for Multiplex Microscopy

  Language:Python2512

• keycastr/keycastr

  KeyCastr, an open-source keystroke visualizer

  Language:Objective-C12.8k519

• albertopiras/threeJS-object-controls

  ThreeJS module that allows you to rotate an Object (mesh) independently from the rest of the scene, and to zoom in/out moving the camera.

  Language:JavaScript11037

• jglev/obsidian-paste-mode

  Obsidian Notes plugin for pasting text and blockquotes to the cursor's current level of indentation.

  Language:TypeScript492