ziyuanzhao2000

ziyuanzhao2000's Stars

• jax-ml/jax

  Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more

  Language:Python30.6k3375.8k2.8k

• karpathy/minGPT

  A minimal PyTorch re-implementation of the OpenAI GPT (Generative Pretrained Transformer) training

  Language:Python20.3k257722.5k

• dask/dask

  Parallel computing with task scheduling

  Language:Python12.6k2135.2k1.7k

• python-visualization/folium

  Python Data. Leaflet.js Maps.

  Language:Python6.9k1631.1k2.2k

• conda-forge/miniforge

  A conda-forge distribution.

  Language:Shell6.6k55389335

• nlp-with-transformers/notebooks

  Jupyter notebooks for the Natural Language Processing with Transformers book

  Language:Jupyter Notebook3.9k631001.2k

• openai/pixel-cnn

  Code for the paper "PixelCNN++: A PixelCNN Implementation with Discretized Logistic Mixture Likelihood and Other Modifications"

  Language:Python1.9k22649437

• dask/dask-tutorial

  Dask tutorial

  Language:Jupyter Notebook1.8k90104708

• lifan0127/ai-research-assistant

  Aria is Your AI Research Assistant Powered by GPT Large Language Models

  Language:JavaScript1.1k189460

• theislab/single-cell-best-practices

  https://www.sc-best-practices.org

  Language:Jupyter Notebook78519194189

• baker-laboratory/RoseTTAFold-All-Atom

  Language:Python65411126118

• scitedotai/scite-zotero-plugin

  scite zotero plugin

  Language:TypeScript627154727

• TissueImageAnalytics/tiatoolbox

  Computational Pathology Toolbox developed by TIA Centre, University of Warwick.

  Language:Python389714681

• mahmoodlab/UNI

  Towards a general-purpose foundation model for computational pathology - Nature Medicine

  Language:Jupyter Notebook35374249

• inulute/perplexity-ai-app

  The Perplexity AI Desktop App, powered by Electron which brings the magic of AI language processing to your desktop.

  Language:JavaScript347102241

• maduc7/Histopathology-Datasets

  Ressources of histopathology datasets

  2838346

• ericmjl/dl-workshop

  Crash course to master gradient-based machine learning. Also secretly a JAX course in disguise!

  Language:Jupyter Notebook223101054

• harmslab/pdbtools

  A set of tools for manipulating and doing calculations on wwPDB macromolecule structure files

  Language:Python17218765

• clementfarabet/manifold

  A package to manipulate manifolds.

  Language:Lua141151231

• mahmoodlab/PANTHER

  Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024

  Language:Jupyter Notebook9732311

• royerlab/cytoself

  Self-supervised models for encoding protein localization patterns from microscopy images

  Language:Python7452314

• AdalbertoCq/Histomorphological-Phenotype-Learning

  Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Quesne J.*, Tsirigos A.*, and Yuan K.* Mapping the landscape of histomorphological cancer phenotypes using self-supervised learning on unlabeled, unannotated pathology slides. 2024'

  Language:Python494612

• mmtsb/toolset

  MMTSB Tool Set

  Language:Perl302613

• cwlkr/torchvahadane

  Gpu accelerated vahadane stain normalization for Digital Pathology workflows.

  Language:Python20233

• LSSI-ETH/meta-learning-for-protein-engineering

  Meta learning addresses noisy and under-labeled data in machine learning-guided antibody engineering (https://doi.org/10.1016/j.cels.2023.12.003)

  Language:Python19103

• aiff22/DeepCMorph

  Histopathological Image Classification with Cell Morphology Aware Deep Neural Networks

  Language:Python11221

• KULL-Centre/_2024_Cao_CALVADOSCOM

  Language:Jupyter Notebook10131

• moldyn/NorMI

  Generalized Kraskov Estimator for Normalized Mutual Information

  Language:Python10031

• glencoesoftware/ome-omero-roitool

  OME and OMERO ROI tool

  Language:Java51387

• labsyspharm/cylinter-paper

  Language:Jupyter Notebook130