zj-zhang
Division of Artificial Intelligence in Medicine
@zhanglab-aim Cedars-Sinai Medical CenterLos Angeles
Pinned Repositories
CLAM
CLIP-seq Analysis of Multi-mapped reads
DARTS
Deep-learning Augmented RNA-seq analysis of Transcript Splicing
AMBER
Automated Modelling for Biological Evidence-based Research
Amber-Seq
Applying Neural Architecture Search to Genomic Sequences Modelling
BioNAS-pub
Public version of BioNAS, a Neural Architecture Search method for interpretable Bioinformatics applications
CLAM_ENCODE_Snakemake
Snakemake pipeline for running CLAM on ENCODE eCLIP data
CLAM_m6A_Snakemake
Snakemake pipeline of CLAM processing m6A RIP-seq (MeRIP)
Darts_BHT
deepsea_keras
Keras implementation of Deepsea
Elektrum
zj-zhang's Repositories
zj-zhang/AMBER
Automated Modelling for Biological Evidence-based Research
zj-zhang/Amber-Seq
Applying Neural Architecture Search to Genomic Sequences Modelling
zj-zhang/deepsea_keras
Keras implementation of Deepsea
zj-zhang/Elektrum
zj-zhang/BioNAS-pub
Public version of BioNAS, a Neural Architecture Search method for interpretable Bioinformatics applications
zj-zhang/CLAM_ENCODE_Snakemake
Snakemake pipeline for running CLAM on ENCODE eCLIP data
zj-zhang/CLAM_m6A_Snakemake
Snakemake pipeline of CLAM processing m6A RIP-seq (MeRIP)
zj-zhang/Darts_BHT
zj-zhang/pandoc-markdown-resume
Pandoc-converted Markdown Resume
zj-zhang/aden
Bayesian Nonparametric Ensemble for Spatiotemporal Processes
zj-zhang/CHARM-AlternativeSplicing
A collection of jupyter notebooks, for Blood Transcriptome Analysis of Alternative Splicing in CHARM Covid-19 datasets
zj-zhang/CHARM-SexDiff-Splicing
zj-zhang/CLAM-BleedingEdge
CLIP-seq Analysis of Multi-mapped reads
zj-zhang/CLAM_m6A_plots
zj-zhang/DARTS-BleedingEdge
Deep-learning Augmented RNA-seq analysis of Transcript Splicing
zj-zhang/Darts_DNN
zj-zhang/DNABERT
DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome
zj-zhang/gitignore
A collection of useful .gitignore templates
zj-zhang/inDelphi-model
Predictive model for CRISPR-mediated DNA repair outcomes through NHEJ/MMEJ, built with machine learning
zj-zhang/m6A_lowinput_mouse_notebook
Low input m6A analysis notebook for Samir's mouse data
zj-zhang/myblog
zj-zhang/MyNotebooks
zj-zhang/picture_store
a repo for storing our pictures
zj-zhang/pnet_prostate_paper
P-NET, Biologically informed deep neural network for prostate cancer classification and discovery
zj-zhang/python-spider
:rainbow:Python3网络爬虫实战：VIP视频破解助手；GEETEST验证码破解；小说、动漫下载；手机APP爬取；财务报表入库；火车票抢票；抖音APP视频下载；百万英雄辅助；网易云音乐批量下载
zj-zhang/revigoR
Scripts for accessing revigo gene ontology plots from R
zj-zhang/UK_Biobank_GWAS
Overview of the data QC, code, and GWAS summary output from the 2017 UK Biobank data release