zjshi/Maast

Issues

• SNP matrix for all genome

  #27 opened 6 months ago by dugala239
  10

• Duplicate entries in GT results

  #29 opened 4 months ago by doy-pin
  1

• maast for fungi

  #28 opened 4 months ago by ramiroricardo
  1

• downstream analysis of maast output

  #26 opened 6 months ago by dugala239
  0

• error at kmer start

  #25 opened 8 months ago by thomasprasad
  0

• SNP Postion - Starting from 0?

  #23 opened 10 months ago by Kadsae
  0

• Error AttributeError: Can't pickle local object 'parallel.<locals>.init_worker'

  #24 opened 10 months ago by ammaraziz
  0

• Will there be an option to truly specify the reference genome

  #22 opened 10 months ago by drhoads
  9

• [Question] How to interpret the `gt_results` in relation to the --ref-fna?

  #21 opened a year ago by jolespin
  3

• KeyError: ?

  #20 opened a year ago by liushuqing506
  1

• tree building failed

  #18 opened 2 years ago by Shaokang123
  2

• Tag a release?

  #19 opened 2 years ago by druvus
  4

• Conda installation

  #1 opened 2 years ago by snayfach
  2

• Missing field names on concat_allele.aln.mat

  #10 opened 2 years ago by snayfach
  2

• maast tree --input-list option

  #9 opened 2 years ago by snayfach
  3

• Error on Database Building

  #17 opened 2 years ago by jamesPet
  1

• IndexError: list index out of range

  #16 opened 2 years ago by jamesPet
  3

• Add wiki

  #11 opened 3 years ago by snayfach
  1

• VCF file format

  #15 opened 3 years ago by snayfach
  1

• Improve help text

  #12 opened 3 years ago by snayfach
  1

• Fix usage in help text

  #2 opened 3 years ago by snayfach
  3

• Add readme to output directory

  #14 opened 3 years ago by snayfach
  1

• Add version number

  #13 opened 3 years ago by snayfach
  1

• Small example dataset for testing

  #3 opened 3 years ago by snayfach
  8

• Default number of threads

  #7 opened 3 years ago by snayfach
  2

• Division by zero error

  #6 opened 3 years ago by snayfach
  3

• Improve logging messages

  #8 opened 3 years ago by snayfach
  1

• Check if genomes exists

  #5 opened 3 years ago by snayfach
  2

• gzip support for FASTA files

  #4 opened 3 years ago by snayfach
  0