zjuezhen's Stars
dariyasydykova/open_projects
This repository contains ROC and precision-recall curve animations
gagneurlab/FRASER
FRASER - Find RAre Splicing Events in RNA-seq
ebi-pf-team/interproscan
Genome-scale protein function classification
biojava/biojava-tutorial
:book::books:An introductory tutorial for BioJava
SSPuliasis/ProtView
crux-toolkit/crux-toolkit
R-Najjar/RiboSplitter
RNA alternative splicing protein translation prediction
compomics/ThermoRawFileParser
Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono
bcgsc/RNA-Bloom
:hibiscus: reference-free transcriptome assembly for short and long reads
EI-CoreBioinformatics/portcullis
Splice junction analysis and filtering from BAM files
OlgaVT/Alternative-Splicing-Tools
A list of alternative splicing analysis resources
kentsisresearchgroup/ProteomeGenerator2
Precise, genome-scale, personalized, and sample-specific proteogenomic analysis
zimmerlab/MS-EmpiRe
fgcz/rawrr
Access Orbitrap data in R lang using C# mono assembly - bioconductor package
gpertea/stringtie
Transcript assembly and quantification for RNA-Seq
jackievaleri/BioAutoMATED
Automated machine learning for analyzing, interpreting, and designing biological sequences
BrooksLabUCSC/flair
Full-Length Alternative Isoform analysis of RNA
YuanyueLi/MSViewer
a tool to visualize spectra, calculate spectral similarity in real time.
YuanyueLi/SpectralEntropy
The similarity score for spectral comparison
thermofisherlsms/iapi
Instrument Application Programming Interface
wupengomics/PASS
PASS: a Proteomics Alternative Splicing Screening pipeline
compbiolabucf/AS-Quant
Quantitation and visualization of differential alternative splicing events
ratschlab/spladder
Tool for the detection and quantification of alternative splicing events from RNA-Seq data.
comprna/SUPPA
SUPPA: Fast quantification of splicing and differential splicing
cole-trapnell-lab/cufflinks
hartleys/JunctionSeq
The JunctionSeq R package is a powerful tool for testing and visualizing differential usage of exons and splice junctions in next-generation, high-throughput RNA-Seq experiments.
nsalomonis/altanalyze
AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.
compomics/ms2pip
MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
compomics/ms2rescore
Modular and user-friendly platform for AI-assisted rescoring of peptide identifications
tgen/bisbee
alternative splicing analysis pipeline