zyx287

zyx287's Stars

• ivan-lednev/obsidian-day-planner

  An Obsidian plugin for day planning with a clean UI and a simple task format

  Language:TypeScript2k501

• baicaiPCX/PcxTools

  程序员日常提高工作效率的脚本工具

  Language:Python21

• dpeerlab/Palantir

  Single cell trajectory detection

  Language:Jupyter Notebook21350

• seung-lab/zmesh

  Marching Cubes & Mesh Simplification on multi-label 3D images.

  Language:C++588

• constantinpape/z5

  Lightweight C++ and Python interface for datasets in zarr and N5 format

  Language:C++10827

• AllenInstitute/OFS-EM-Connectomics

  Code and data for the 2021 Open for Science tutorial for EM connectomics.

  Language:Jupyter Notebook54

• funkey/nyroglancer

  jupyter notebook extension to visualize numpy arrays with the neuroglancer

  Language:Python2811

• seung-lab/chunkflow

  Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation

  Language:Python508

• AllenInstitute/MicronsBinder

  A collection of notebooks to provide examples of using Microns-explorer.org datasets

  Language:Jupyter Notebook3316

• navis-org/skeletor

  Extraction of 3D skeletons from meshes.

  Language:Python20826

• mmorehea/vol2mesh

  Software glue to produce 3D meshes from volumetric data

  Language:Python26

• HumanBrainProject/neuroglancer-scripts

  Conversion of neuroimaging data for display in Neuroglancer

  Language:Python2718

• matlabbaltam/Neuron-Morphology

  This is for neuron morphology analysis

  Language:Python21

• seung-lab/euclidean-distance-transform-3d

  Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.

  Language:C++23637

• yuriyzubov/tif-to-zarr

  Language:Python2

• janelia-flyem/ConnectomeHackathon2015

  Information on the Janelia Connectome Workshop and Hackathon 2015

  61

• CellProfiler/CellProfiler

  An open-source application for biological image analysis

  Language:Python899378

• google/neuroglancer

  WebGL-based viewer for volumetric data

  Language:TypeScript1.1k295

• janelia-cellmap/dacapo

  A framework for easy application of established machine learning techniques on large, multi-dimensional images.

  Language:Python384

• janelia-cellmap/fibsem-tools

  Tools for handling FIB-SEM data and annotations

  Language:Python178

• stegmaierj/Cellpose3D

  3D Extension of the Cellpose Algorithm by Stringer et al., 2021.

  Language:Python306

• CSBDeep/CSBDeep

  Image restoration for fluorescence microscopy

  Language:Python28182

• JaneliaSciComp/awesome-janelia-software

  A curated list of awesome Janelia software

  1410

• betaseg/cellsketch

  Language:Java8

• kaixindelele/ChatPaper

  Use ChatGPT to summarize the arXiv papers. 全流程加速科研，利用chatgpt进行论文全文总结+专业翻译+润色+审稿+审稿回复

  Language:Python18.3k1.9k

• janelia-cellmap/cellmap-models

  Repository of model architectures and network weights used for CellMap segmentations.

  Language:Python9

• betaseg/protocol-notebooks

  Language:Jupyter Notebook31

• saalfeldlab/CNNectome

  Scripts for building, training and validating CNNs for Connectomics

  Language:Python129

• janelia-cellmap/heinrich-2021a

  Resources for Heinrich et al., 2021

  183

• janelia-cellmap/cosem-segmentation-analysis

  Code to segment and analyze COSEM predictions

  Language:Shell41