Pinned Repositories
neuron-mis-pruning
v3d-py-helper
Make Vaa3D functions accessible for high-performance python computation.
v3dx-docker
DSM-tools
CrystalTracer
fmcd-docker
Functional mouse connectome database for docker
insitu
insitu-tools
A set of command line tools that find and compare In situ expression patterns between mRNA expression images.
InterpretableSCRNA
r3f-swc-viewer
Created with CodeSandbox
zzhmark's Repositories
zzhmark/CrystalTracer
zzhmark/insitu
zzhmark/insitu-tools
A set of command line tools that find and compare In situ expression patterns between mRNA expression images.
zzhmark/InterpretableSCRNA
zzhmark/NIEND
zzhmark/Order-independent-rendering-wrapper-on-threejs
A simple class that wraps your renderer and provide basic oit rendering for your opaque and transparent objects.
zzhmark/r3f-swc-viewer
Created with CodeSandbox
zzhmark/zfp148-peak-clustering
zzhmark/fmcd-docker
Functional mouse connectome database for docker
zzhmark/230k-dendrite-tracing
This is a repo for experimental codes on large-scale reconstruction of 230k mouse neurons.
zzhmark/attractor-langchain
zzhmark/BatchLabel
A Vaa3D plugin, can read batches of 3D block and images and their swc(optional), let users label them with different tags, and export a table. This is useful for generate training and testing dataset for machine learning and other big data research.
zzhmark/BloodGlucoseMLData
Publicly available datasets for blood glucose prediction. This public repository is intended to facilitate data import to projects.
zzhmark/ccf-db
zzhmark/ccf-db-backend
zzhmark/ccf-model-gen
Scripts for generating draco models based on CCFv3 annotation.
zzhmark/gs-neuron-check
zzhmark/insitu-GMM-on-umap
Apply insitu Gaussian mixture model segmentation on umap results.
zzhmark/itk-vtk-lib-lung-segment-demo
Medical Image Processing Coursework, BME, SEU
zzhmark/linlab_probe_pipeline
zzhmark/neuro-morpho-spectrum
Applying spectrum analysis methods on neuron morphology.
zzhmark/pbs-bash-v3d-app2
Scripts for APP2 auto-tracing on a PBS server
zzhmark/tc-project
A simple course assignment
zzhmark/TeraQC
Whole Brain image quality check based on TeraConverted image blocks.
zzhmark/the-littlest-jupyterhub
Simple JupyterHub distribution for 1-100 users on a single server
zzhmark/tip_label_widget
zzhmark/TracingAlloy
zzhmark/traefik
The Cloud Native Edge Router
zzhmark/v3d_external
www.vaa3d.org : download the latest Binary version here https://github.com/Vaa3D/release/releases/tag/v3.200
zzhmark/zzhmark
Config files for my GitHub profile.