zzlzef

Pinned Repositories

bacterial-pop-structure
Repository containing RMarkdowns and scripts to explore the genetic population structure of Pseudomonas alloputida
Language:Python0 0 00
covid19-sequence-using-biopython
COVID-19 Sequencing & Analysis with Biopython Analyze COVID-19 sequences: amino acids, AT/GC content, DNA composition, and visualize with bar plots.
Language:Jupyter Notebook0 0 00
F100_Prok_Recombination
Repository for F100 method of prokaryote recombination analysis
Language:Python00
FastOrtho
Language:C++00
flaq_sc2
FL BPHL's SARS-CoV-2 (SC2) analysis pipeline for Illumina paired-end, whole-genome tiled-amplicon data
Language:Python00
flaq_sc2_meta
FL BPHL's SARS-CoV-2 (SC2) analysis pipeline for Illumina paired-end, whole-genome tiled-amplicon data enriched from environmental metagenomic samples (e.g., wastewater)
Language:Python00
greek-covid19-assembly
Process and tutorial for de novo (potentially guided) SARS-CoV-2 genome assembly from samples derived from Greek patients. Also part of the pMedGR initiative.
00
Meloidogyne_Genomes
0 0 00
MicrobialGenomicsScripts
A selection of short scripts for analyzing microbial genomes
Language:Python0 0 00
my_script_test
script_test
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zzlzef's Repositories

zzlzef/bacterial-pop-structure
Repository containing RMarkdowns and scripts to explore the genetic population structure of Pseudomonas alloputida
Language:Python0 0 00
zzlzef/covid19-sequence-using-biopython
COVID-19 Sequencing & Analysis with Biopython Analyze COVID-19 sequences: amino acids, AT/GC content, DNA composition, and visualize with bar plots.
Language:Jupyter Notebook0 0 00
zzlzef/F100_Prok_Recombination
Repository for F100 method of prokaryote recombination analysis
Language:Python00
zzlzef/FastOrtho
Language:C++00
zzlzef/flaq_sc2
FL BPHL's SARS-CoV-2 (SC2) analysis pipeline for Illumina paired-end, whole-genome tiled-amplicon data
Language:Python00
zzlzef/flaq_sc2_meta
FL BPHL's SARS-CoV-2 (SC2) analysis pipeline for Illumina paired-end, whole-genome tiled-amplicon data enriched from environmental metagenomic samples (e.g., wastewater)
Language:Python00
zzlzef/greek-covid19-assembly
Process and tutorial for de novo (potentially guided) SARS-CoV-2 genome assembly from samples derived from Greek patients. Also part of the pMedGR initiative.
00
zzlzef/Meloidogyne_Genomes
0 0 00
zzlzef/MicrobialGenomicsScripts
A selection of short scripts for analyzing microbial genomes
Language:Python0 0 00
zzlzef/my_script_test
script_test
00
zzlzef/NMDS-Analysis
nmds分析画图
Language:R0 0 00
zzlzef/PCA_PCoA_NMDS
Language:R0 0 00
zzlzef/Rhea
A set of R scripts for the analysis of microbial profiles
Language:R0 0 00
zzlzef/RNA-seq-analysis
RNAseq analysis notes from Ming Tang
Language:Python0 0 00
zzlzef/nf-ncov-voc
A Nextflow wrapped workflow for generating the mutation profiles of SARS-CoV-2 genomes (Variants of Concern and Variants of Interest). Workflow is developed in collaboration with COVID-MVP (https://github.com/cidgoh/COVID-MVP) which can be used to visualize the mutation profiles and functional annotations.
zzlzef/psga-pipeline-sars-cov-2
Repository for Pathogen Sequence Genome Analysis Sars CoV 2 pipeline
zzlzef/Reference_guided_mapping_SARS-CoV-2_Genome
The following script describes the processing of a SARS-CoV-2 genome, from a Fastq file to genome assembly using mapping against a reference.
zzlzef/run_dbcan
Run_dbcan V2, using genomes/metagenomes/proteomes of any orgaisms(prokaryotes, fungi, plants, animals, viruses) to search for CAZymes.
Language:C0 0
zzlzef/SARS-CoV-2-Genome-Assembly-and-Annotation
zzlzef/setu
SARS-CoV-2 Genome Assembler
zzlzef/UK-lineage-dynamics-analysis
Large-scale virus genome sequencing reveals the genetic structure and importation dynamics of a national COVID-19 epidemic.
zzlzef/viper
VIPER is a user-friendly software for assembling and identifying viral genomes (currently SARS-CoV-2, Dengue, and Influenza), from Illumina sequencing data generated through genomic surveillance.