Pinned Repositories
16s-qiime2
Analysis of microbiome samples in CWL using QIIME2
16S_rRNA_bacterial_communities_analysis
The set of scripts for programming language R for analyzing genetic and taxonomic diversity of bacterial communities received by metagenomic data of 16S rRNA
A-microbiologist-wants-to-compute
This repo collects the list of learning online resources related to microbiome computational science and tools.
adv-r
Advanced R: a book
AdvancedR
SIOB-296 Advanced R Programming
ampvis2
Tools for visualising amplicon data
An-Introduction-To-Applied-Bioinformatics
Interactive lessons in bioinformatics.
Analysis-of-community-composition
A set of scripts for analyzing the composition of a community of organisms using a package of vegan for the programming language R
analysis_of_microbiome_community_data_in_r
This is the source code for the "Analysis of Microbiome Community Data in R" ICPP 2018 workshop. The website is available at: https://grunwaldlab.github.io/analysis_of_microbiome_community_data_in_r/
POGO_ML_workshop_genomics
POGO 2019 Workshop on Machine Learning and Artificial Intelligence in Biological Oceanographic Observations
AHdeRojas's Repositories
AHdeRojas/An-Introduction-To-Applied-Bioinformatics
Interactive lessons in bioinformatics.
AHdeRojas/POGO_ML_workshop_genomics
POGO 2019 Workshop on Machine Learning and Artificial Intelligence in Biological Oceanographic Observations
AHdeRojas/16s-qiime2
Analysis of microbiome samples in CWL using QIIME2
AHdeRojas/16S_rRNA_bacterial_communities_analysis
The set of scripts for programming language R for analyzing genetic and taxonomic diversity of bacterial communities received by metagenomic data of 16S rRNA
AHdeRojas/AdvancedR
SIOB-296 Advanced R Programming
AHdeRojas/analysis_of_microbiome_community_data_in_r
This is the source code for the "Analysis of Microbiome Community Data in R" ICPP 2018 workshop. The website is available at: https://grunwaldlab.github.io/analysis_of_microbiome_community_data_in_r/
AHdeRojas/apuntesMaster
Apuntes estadística Master
AHdeRojas/classifier
RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s
AHdeRojas/CursoGenomicaRyC
AHdeRojas/Dockerfiles
Docker projects for bioinformatics tools
AHdeRojas/EcoIndR
:exclamation: This is a read-only mirror of the CRAN R package repository. EcoIndR — Ecological Indicators
AHdeRojas/emp
Code repository of the Earth Microbiome Project.
AHdeRojas/Frontiers_2017
Supplement for Frontiers article
AHdeRojas/longitudinal-notebooks
AHdeRojas/masame
Code to run the shiny functions for the MASAME suite
AHdeRojas/Metabarcoding_school_colombia
9th metabarcoding school - ML-based biomonitoring
AHdeRojas/MetagenomeCourse2019
Course material for the metagenomics course
AHdeRojas/Microbial-bioinformatics-introductory-course-Material-2018
AHdeRojas/microbiome
microbiome R package
AHdeRojas/MicrobiomeAnalystR
A companion R package for the MicrobiomeAnalyst web server
AHdeRojas/microbiomeSeq
An R package for microbial community analysis in an environmental context
AHdeRojas/mira
MIRA sequence assembler
AHdeRojas/mixs-legacy
Spreadsheet formatted MIxS standard template
AHdeRojas/NormqPCR
Analyse qPCR data including selection of optimal reference gene(s) and normalisation
AHdeRojas/pogo_bioobs
The Partnership for Observing the Global Ocean's 2019 Workshop on Machine Learning in Biological Observations
AHdeRojas/qiime
Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.
AHdeRojas/RDPTools
Collection of commonly used RDP Tools for easy building
AHdeRojas/sci-hub
A simple extension for safari web browser to access papers
AHdeRojas/SMURF
AHdeRojas/Tools-Microbiome-Analysis
A list of R environment based tools for microbiome data exploration, statistical analysis and visualization