AI-sandbox/gnomix

Issues

• Stucking at analysing model performance

  #46 opened 10 months ago by bgyuris
  2

• Bash script "download_pretrained_models.sh" doesnt work

  #51 opened 2 months ago by lcsfaria
  1

• Versioned releases

  #27 opened 2 years ago by BEFH
  3

• unsure if constructed models in GRCh38 are correct

  #50 opened 3 months ago by vifehe
  0

• error of "struct.error: 'i' format requires -2147483648 <= number <= 2147483647"

  #42 opened a year ago by buyske
  2

• Can pre-trained models be used on GRCh38 data?

  #43 opened a year ago by mojoman666
  1

• Error while training

  #47 opened 7 months ago by EfraMP
  1

• Gnofix standalone functionality

  #29 opened 2 years ago by imanhamid
  2

• Merging MSP and VCF variant/ ancestry calling is .0|.1 correct?

  #48 opened 6 months ago by pediconeC
  0

• Feature Request: Option to subset reference SNPs to query file positions before training

  #11 opened 3 years ago by weekend37
  1

• Pre-Trained Models Calibration Issue

  #44 opened a year ago by maecorine
  1

• Error when training model from scratch

  #39 opened 2 years ago by oshiomah1
  2

• Confused by implausible results on array data

  #28 opened a year ago by buyske
  5

• Error: Too few founders

  #41 opened a year ago by LaraArauna
  0

• Not Non-negative probabilities when training the model from scratch

  #40 opened 2 years ago by jikhashkya
  2

• Strange results on 23 and me genotype data and pretrained models

  #22 opened 2 years ago by enabieva
  8

• demo.ipynb has a bad script

  #25 opened 2 years ago by juanbigotes
  2

• Incorrect window count in training set #2

  #23 opened 2 years ago by popgengent
  2

• Insane memory usage

  #32 opened 2 years ago by BEFH
  6

• Duplicated header in vcf output

  #30 opened 2 years ago by weekend37
  0

• Inquire regarding Phasing Correction and LAI results

  #17 opened 2 years ago by guidebortoli
  17

• Incomplete license

  #2 opened 3 years ago by mp15
  0

• Issue in training mode : Qt platform plugin xcb

  #24 opened 2 years ago by jcgrenier
  0

• Can't download pre-trained models

  #21 opened 2 years ago by jcgrenier
  1

• Gnofix

  #15 opened 3 years ago by hnisonoff
  3

• Feature Request: Option to output .bed files with contiguous segments for each sample in query file

  #12 opened 3 years ago by weekend37
  0

• Preserve header and add ALT allele to query_file_phased.vcf

  #7 opened 3 years ago by obedaram
  2

• PerformanceWarning message

  #6 opened 3 years ago by guidebortoli
  9

• AttributeError: 'XGBClassifier' object has no attribute 'enable_categorical'

  #9 opened 3 years ago by buyske
  2

• AttributeError: 'LogisticRegressionBase' object has no attribute 'vectorize'

  #8 opened 3 years ago by buyske
  2

• Issue with the requirement.txt

  #5 opened 3 years ago by guidebortoli
  6

• sklearn version for pre-trained model for demo is different than requirements.txt

  #3 opened 3 years ago by eardil
  1

• Error from predict_proba call

  #1 opened 3 years ago by buyske
  2