Pinned Repositories
AgustinPardo
BacSixTnS
16S ribosomal RNA gene amplicons pipeline starting from Illumina-sequenced paired-end fastq files that have been split (or “demultiplexed”) by sample and from which the barcodes/adapters have already been removed. The end product is an amplicon sequence variant (ASV) table, a higher-resolution analogue of the traditional OTU table.
demultiplex
Demultiplex fastq R1 R2 sequencing files by barcode
galileo_docker_mafft
LIPS-pathwayTools-queries
pathwaytools-target-Integration
phylogeography
PROM-implementation
PROM: probabilistic regulation of metabolism
Target-Reactome-Integration
upDownStreamSeqsFromGbk
Extract upstream and downstream gene regions from a genbank file using gene ids
AgustinPardo's Repositories
AgustinPardo/Algoritmos-ll
AgustinPardo/Biocyc-Reactome-integration
Tool to search reactions, pathways, curation evidence in Cyc data bases by gene name or Uniprot id
AgustinPardo/kinCoke
A package for greetings
AgustinPardo/msa_analysis
AgustinPardo/mycoRT
Transcriptional Regulatory Network of Mycobacterium tuberculosis H37Rv
AgustinPardo/ObraSocial
AgustinPardo/partSoobDist
AgustinPardo/PathwayTools-MetabolicCompare
Compare pathways and reactions from pathwayTools metabolisms reconstrucions between species
AgustinPardo/phyloseq-OTUs-analysis
Implementation of phyloseq R package to analyse microbiological communities from Operational Taxonomic Units (OTUs)
AgustinPardo/vardb
Toolbox to create and analyze sequence variants from multiple sources.