AllenInstitute/neuron_morphology
Tools for working with single-neuron morphological reconstructions
PythonNOASSERTION
Issues
- 0
Neuron reconstruction team to use this version of neuron_morphology to quality control swc and marker files before uploading
#219 opened by MatthewMallory - 4
use snap_polygons without pia/wm paths
#189 opened by tmchartrand - 0
- 1
make release of neuron morphology
#196 opened by gnayuy - 3
Generate transformed SWC files for Q2 2021 release
#195 opened by wbwakeman - 0
Compute features outside visual areas
#194 opened by wbwakeman - 1
snap_polygons FromLimsSource functionality broken
#190 opened by tmchartrand - 0
circleci failures: Unable to open file, etc
#193 opened by tmchartrand - 0
- 2
Neuron Morphology Pipeline status tracking
#171 opened by NileGraddis - 0
- 0
Fix breaking neuron_morphology issues
#186 opened by wbwakeman - 0
Create static image of neuron reconstruction
#183 opened by wbwakeman - 0
EM transform and features
#184 opened by wbwakeman - 0
- 2
Add Hausdorff dimension to morphological features
#177 opened by MKRangers - 1
Stem exit feature bugs
#158 opened by gouwens - 0
- 0
Make parent-daughter ratio NaN-safe
#179 opened by wbwakeman - 0
- 3
Update latest_reconstructions script to write files named with cell specimen id
#169 opened by wbwakeman - 1
Implement tracking system for tracking runs
#136 opened by wbwakeman - 0
reference docs missing some functions
#174 opened by NileGraddis - 2
Design run tracking system
#157 opened by wbwakeman - 1
odd layer drawings
#168 opened by NileGraddis - 0
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- 0
- 0
- 0
Test Tilt from Axon/Apical Dendrite Trunk
#167 opened by MatthewAitken - 0
Generate transformed SWC files for June release
#127 opened by wbwakeman - 0
Fargate throttles task submissions
#151 opened by NileGraddis - 0
- 0
Shrinkage correction should not scale neurite radii
#150 opened by sgratiy - 0
Create summary image of morphology
#147 opened by wbwakeman - 0
- 0
access point for landing bucket
#140 opened by NileGraddis - 0
implement depth field computation in pipeline
#118 opened by wbwakeman - 1
Implement upright transform in pipeline
#119 opened by wbwakeman - 0
Implement tilt correction in pipeline function
#115 opened by wbwakeman - 0
Implement scale transform in step function
#114 opened by wbwakeman - 1
Create basic step function
#113 opened by wbwakeman - 0
- 1
- 0
request AWS resources for pipeline
#124 opened by NileGraddis - 0
- 0
Complete design of morphology pipeline
#111 opened by wbwakeman - 0
- 0
- 0
update validation criteria
#109 opened by wbwakeman