Pinned Repositories
mouseCNS_vae
Results and code from the manuscript: Deep Learning Identifies Multi-layered Roles of Polycomb Repressor Complex 2 During Mouse CNS Development
scibiomart
A wrapper around biomart for python based on the biomart API
scidat
scidat a package for downloading and annotating data from TCGA
sciepi2gene
Sci-epi2gene maps events annotated to a genome location to nearby genes.
scitemplate
Template for making a python package
scivae
VAE package for reproducible generative models of biological data
sciviso
A wrapper to plot chats in a consistent manner
SiRCle_multiomics_integration
SiRCleR
R package for SiRCle
GRASP
Graphical Representation of Ancestral Sequence Predictions
ArianeMora's Repositories
ArianeMora/scivae
VAE package for reproducible generative models of biological data
ArianeMora/SiRCleR
R package for SiRCle
ArianeMora/docko
docking is all you need...
ArianeMora/scidat
scidat a package for downloading and annotating data from TCGA
ArianeMora/scibiomart
A wrapper around biomart for python based on the biomart API
ArianeMora/scitemplate
Template for making a python package
ArianeMora/sciviso
A wrapper to plot chats in a consistent manner
ArianeMora/mouseCNS_vae
Results and code from the manuscript: Deep Learning Identifies Multi-layered Roles of Polycomb Repressor Complex 2 During Mouse CNS Development
ArianeMora/SiRCle_multiomics_integration
ArianeMora/DeepTreeAttention
Implementation of Hang et al. 2020 "Hyperspectral Image Classification with Attention Aided CNNs" for tree species prediction
ArianeMora/deps
Dependencies as built packages when the authors didn't build packages so I can deploy to pip
ArianeMora/sciepi2gene
Sci-epi2gene maps events annotated to a genome location to nearby genes.
ArianeMora/foxa2_kirp_kirc
ArianeMora/grasp-docker
ArianeMora/KIRP_PE2
Repository for analysis of HIRA expression in KIRP
ArianeMora/momix-notebook
ArianeMora/msa
Modular BioJS compoment for a multiple sequence alignment
ArianeMora/oligopoolio
pools and primers <3
ArianeMora/phylotree.js
Interactive viewer of phylogenetic trees
ArianeMora/public_cancer_data
This is a repo of cancer data from TCGA and CPTAC post processed in a uniform way to filter out outliers & make datasets that are ameanable to downstream statistical analsyes
ArianeMora/pysam
Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
ArianeMora/pytorch-topological-playground
Testing various extenstions to topological machine learning framework based on PyTorch
ArianeMora/regRCPqn
ArianeMora/remseno
Remote Sensing ocker style m8
ArianeMora/scibacr
RNA modification detection in bacteria
ArianeMora/scimotf
Performs a FET to find motifs enriched in clusters of genes.
ArianeMora/scircm
ArianeMora/SiRCle_M1
M1 compatible version of SiRCle
ArianeMora/SiRCle_web
Web app for performing clustering on DNA methylation, gene expression and protein data
ArianeMora/SiRCleR_M1
R version for Mac M1 chip