Pinned Repositories
aws-tensorflow-setup
Install TensorFlow on AWS GPU-instance
concise
CONCISE (COnvolutional neural Networks for CIS-regulatory Elements)
gin-train
Tracking ML experiments using gin-config, wandb, comet.ml and S3.
kopt
Hyper-parameter optimization for Keras
nimnexus
command-line tools for processing ChIP-nexus data
concise
Concise: Keras extension for regulatory genomics
kipoi
Kipoi's model zoo API
kipoiseq
Standard set of data-loaders for training and making predictions for DNA sequence-based models.
models
Model zoo for genomics
bpnet
Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them
Avsecz's Repositories
Avsecz/kopt
Hyper-parameter optimization for Keras
Avsecz/concise
CONCISE (COnvolutional neural Networks for CIS-regulatory Elements)
Avsecz/nimnexus
command-line tools for processing ChIP-nexus data
Avsecz/gin-train
Tracking ML experiments using gin-config, wandb, comet.ml and S3.
Avsecz/fitbitr
fitbitr: An R Interface To The Fitbit API
Avsecz/DL-genomics-exercise
Jupyter notebooks for the system genetics lecture exercise 11 thought at TUM
Avsecz/dotemacs
My emacs configuation.
Avsecz/awesome-deepbio
A curated list of awesome deep learning applications in the field of computational biology
Avsecz/bioconda-recipes
Conda recipes for the bioconda channel.
Avsecz/cookiecutter
A command-line utility that creates projects from cookiecutters (project templates). E.g. Python package projects, jQuery plugin projects.
Avsecz/cookiecutter-pypackage
Cookiecutter template for a Python package.
Avsecz/cookiecutter-R-package
Avsecz/data-science-ipython-notebooks
Continually updated data science Python notebooks: Deep learning (TensorFlow, Theano, Caffe), scikit-learn, Kaggle, big data (Spark, Hadoop MapReduce, HDFS), matplotlib, pandas, NumPy, SciPy, Python essentials, AWS, and various command lines.
Avsecz/DeepExplain
A unified framework of perturbation and gradient-based attribution methods for Deep Neural Networks interpretability
Avsecz/docker-tox-mongo
Extends the themattrix/docker-tox-base with mongodb 3.4
Avsecz/GenoGAM
Avsecz/hub
Submission to https://pytorch.org/hub/
Avsecz/kipoi_model_zoo_dx
example to run Deep Learning model to predict DNA sequence features with Kipoi with DNAnexus platform
Avsecz/Manuscript_Avsec_Bioinformatics_2017
Code for Avsec et al, Bioinformatics 2017
Avsecz/py-upset
A pure-python implementation of the UpSet suite of visualisation methods by Lex, Gehlenborg et al.
Avsecz/pydoc-markdown
Create Python API documentation in Markdown format.
Avsecz/pytorch
Tensors and Dynamic neural networks in Python with strong GPU acceleration
Avsecz/readme-template
README.md template for your open-source project
Avsecz/sacredboard
Dashboard for sacred
Avsecz/snakemake-profiles
Avsecz/test_repo
Avsecz/testlfs
Avsecz/tfmodisco
TF MOtif Discovery from Importance SCOres
Avsecz/topsacred
Small collection of useful functions/tools to work with sacred databases.
Avsecz/vision
Datasets, Transforms and Models specific to Computer Vision