kipoi/kipoiseq

Issues

• 'No loss found. You may have forgotten to provide a `loss` argument '

  #114 opened 2 years ago by xkluan
  0

• Pin sorted-nearest to 0.0.33

  #109 opened 2 years ago by haimasree
  1

• Listing dataloaders available

  #111 opened 2 years ago by ilibarra
  0

• VCF matching returns false results when used with intervals argument

  #107 opened 3 years ago by MuhammedHasan
  0

• "postprocessing" is this part of min_set_props?

  #106 opened 3 years ago by MuhammedHasan
  0

• Bug in variant end calculation

  #104 opened 3 years ago by Hoeze
  3

• pyranges import

  #95 opened 3 years ago by haimasree
  3

• Error with AnchoredGTFDl

  #102 opened 3 years ago by PelFritz
  3

• Kipoiseq installation problems

  #101 opened 3 years ago by PelFritz
  0

• infer_from_cds in UTRFetcher does not work correctly

  #88 opened 4 years ago by Hoeze
  1

• Implement inference for UTRFetcher

  #81 opened 4 years ago by Hoeze
  0

• implement `get_variant` for matching multiple variant

  #53 opened 4 years ago by MuhammedHasan
  0

• Add documentation to all classes / __init__() functions to explain their function

  #79 opened 4 years ago by Hoeze
  0

• Phased dataloader

  #78 opened 4 years ago by Hoeze
  0

• bug in second parameter `Interval` should be interval

  #68 opened 5 years ago by MuhammedHasan
  0

• test optional dependencies

  #65 opened 5 years ago by MuhammedHasan
  0

• Drop python 3.5?

  #58 opened 5 years ago by Hoeze
  3

• write function to check different chromosome annotations

  #55 opened 5 years ago by MuhammedHasan
  0

• Fix doc for `extractors`

  #52 opened 5 years ago by MuhammedHasan
  0

• Implement `Variant` and `Interval` classes. Use them instead of `cyvcf2.Variant` and `pybedtools.Interval`

  #30 opened 5 years ago by Avsecz
  2

• Implement filter method which allows user to write custom filters. Also implement common filters.

  #35 opened 5 years ago by MuhammedHasan
  1

• Allow multiple intervals as input

  #34 opened 5 years ago by MuhammedHasan
  1

• Add strand information to the sequence dataloaders

  #46 opened 5 years ago by stefanches7
  0

• Split variant based on interval start-end if fixed_len=False

  #32 opened 5 years ago by MuhammedHasan
  0

• Validate reference sequence

  #31 opened 6 years ago by Avsecz
  1

• gt_types vs. genotypes-attribute for variant (extractor-MultiSampleVCF)

  #25 opened 6 years ago by JulianRein
  1

• `SingleVariantVCFSeqExtractor` and `SingleSeqVCFSeqExtractor` assume 0-base vcf file

  #26 opened 6 years ago by MuhammedHasan
  0

• In `SingleVariantVCFSeqExtractor` and `SingleSeqVCFSeqExtractor`, compare ref in vcf with fasta

  #29 opened 6 years ago by MuhammedHasan
  0

• Generate .fai file in the IntervalSeqDl __init__

  #27 opened 6 years ago by Avsecz
  0

• Add dataloaders for variant-effect prediction

  #21 opened 6 years ago by Avsecz
  0

• Rename dataloaders

  #13 opened 6 years ago by Avsecz
  3

• fix typo transform in SeqDataset

  #12 opened 6 years ago by Avsecz
  0

• Updating current models with dataloaders from kipoi_dataloaders

  #2 opened 6 years ago by krrome
  0

• Additional transforms

  #8 opened 6 years ago by Avsecz
  1

• Unify interval.stop vs interval.end for resize_interval and extractors

  #10 opened 6 years ago by Avsecz
  0

• getting started notebook

  #9 opened 6 years ago by gagneur
  0

• Design

  #1 opened 6 years ago by Avsecz
  17