Pinned Repositories
ALS-kaggle
Outlier prediction-based solution to Task1 of the End ALS Kaggle challenge
MMSplice_MTSplice
Tissue-specific variant effect predictions on splicing
kipoiseq
Standard set of data-loaders for training and making predictions for DNA sequence-based models.
betabinomial
Beta-Binomial for testing count data
cs.sehir.edu.tr
figure_panel
gencode_utr_fix
Gencode UTR fix
gnomad_rocksdb
pytorch_cublas_matmul_int8
EpiOut
A statistical method to detect, analyze and visualize aberrations in chromatin accessibility (ATAC-seq, DNase-Seq) and quantify its effect on gene expression.
MuhammedHasan's Repositories
MuhammedHasan/gencode_utr_fix
Gencode UTR fix
MuhammedHasan/betabinomial
Beta-Binomial for testing count data
MuhammedHasan/figure_panel
MuhammedHasan/pytorch_cublas_matmul_int8
MuhammedHasan/gnomad_rocksdb
MuhammedHasan/sklearn_utils
Utils I need for projects in scikit learn.
MuhammedHasan/deepseajs
MuhammedHasan/kipoiseq
Standard set of data-loaders for training and making predictions for DNA sequence-based models.
MuhammedHasan/accelerate
🚀 A simple way to launch, train, and use PyTorch models on almost any device and distributed configuration, automatic mixed precision (including fp8), and easy-to-configure FSDP and DeepSpeed support
MuhammedHasan/als-genes-literature
MuhammedHasan/awesome-cancer-variant-databases
A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.
MuhammedHasan/badges
:flower_playing_cards: Readme Badges – Gotta catch 'em all
MuhammedHasan/bamread
Bam to Pandas DataFrame, quickly
MuhammedHasan/cobrapy
COBRApy is a package for constraint-based modeling of biological networks
MuhammedHasan/concise
Concise: Keras extension for regulatory genomics
MuhammedHasan/fastbetabino
Superfast betabinomial fit implemented in Cython
MuhammedHasan/hashcode-2022
MuhammedHasan/hashcode-self-driving-rides
Hashcode 2018 challange
MuhammedHasan/hashcode-slideshow-2019
MuhammedHasan/keras
Deep Learning for humans
MuhammedHasan/miRNA-binding-snakemake
MuhammedHasan/MMSplice-fork
MuhammedHasan/models
Model zoo for genomics
MuhammedHasan/nvim
🥥 Neovim config, 100% Lua
MuhammedHasan/Porechop
adapter trimmer for Oxford Nanopore reads
MuhammedHasan/pyranges
(beta) Performant Pythonic GenomicRanges
MuhammedHasan/SPOT-RNA
RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.
MuhammedHasan/TALON
Technology agnostic long read analysis pipeline for transcriptomes
MuhammedHasan/TranscriptClean
Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome
MuhammedHasan/TSVdb
TCGA Splicing Variation Database