Biodiversity Genomics Academy 2023
Free, open to all, online-only, short, interactive sessions on how to use the bioinformatics tools and resources that underpin the Earth Biogenome Project
United Kingdom
Pinned Repositories
B3
Biodiversity Genomics Academy 2023: Gene prediction with BRAKER3
busco
Biodiversity Genomics Academy 2023: BUSCO - from QC to gene prediction and phylogenomics
cactus
Biodiversity Genomics Academy 2023: Aligning whole genomes using Cactus
earlgrey-te
Biodiversity Genomics Academy 2023: Classifying Transposable Elements with Earl Grey TE
ensembl-annotation
Biodiversity Genomics Academy 2023: Annotating genomes the Ensembl way - General concepts + Case study
genomescope
Biodiversity Genomics Academy 2023: Genome profiling using GenomeScope
hifiasm-telomere
Biodiversity Genomics Academy 2023: Scalable telomere-to-telomere assembly with hifiasm
manual-curation
Biodiversity Genomics Academy 2023: Introduction to Manual Curation - HiC and JBrowse
merqury
Biodiversity Genomics Academy 2023: Assess genome assemblies with Merqury
smudgeplot
Biodiversity Genomics Academy 2023: Understanding k-mers and ploidy using Smudgeplot
Biodiversity Genomics Academy 2023's Repositories
BGAcademy23/B3
Biodiversity Genomics Academy 2023: Gene prediction with BRAKER3
BGAcademy23/smudgeplot
Biodiversity Genomics Academy 2023: Understanding k-mers and ploidy using Smudgeplot
BGAcademy23/ensembl-annotation
Biodiversity Genomics Academy 2023: Annotating genomes the Ensembl way - General concepts + Case study
BGAcademy23/manual-curation
Biodiversity Genomics Academy 2023: Introduction to Manual Curation - HiC and JBrowse
BGAcademy23/genomescope
Biodiversity Genomics Academy 2023: Genome profiling using GenomeScope
BGAcademy23/cactus
Biodiversity Genomics Academy 2023: Aligning whole genomes using Cactus
BGAcademy23/merqury
Biodiversity Genomics Academy 2023: Assess genome assemblies with Merqury
BGAcademy23/busco
Biodiversity Genomics Academy 2023: BUSCO - from QC to gene prediction and phylogenomics
BGAcademy23/earlgrey-te
Biodiversity Genomics Academy 2023: Classifying Transposable Elements with Earl Grey TE
BGAcademy23/gfastar
Biodiversity Genomics Academy 2023: Gfastar: a tool suite to assist genome assembly
BGAcademy23/hifiasm-telomere
Biodiversity Genomics Academy 2023: Scalable telomere-to-telomere assembly with hifiasm
BGAcademy23/ncbidatasets
Biodiversity Genomics Academy 2023: Searching and Downloading Genome Data using NCBI Datasets
BGAcademy23/enaebi-data
Biodiversity Genomics Academy 2023: ENA data retrieval and EMBL-EBI's Biodiversity Portals
BGAcademy23/goat
Biodiversity Genomics Academy 2023: Querying genome metadata and sequencing projects using GoaT
BGAcademy23/BGAcademy23.github.io
BGAcademy23/btk-cli
Biodiversity Genomics Academy 2023: Visualising genome assembly cobionts by running BlobToolKit locally
BGAcademy23/btk-view
Biodiversity Genomics Academy 2023: Checking for cobionts in public genomes using BlobToolKit
BGAcademy23/cngbdb
Biodiversity Genomics Academy 2023: Starting a comparative genome study from CNGBdb: datasets, analysis platform, and spatial transcriptomics database
BGAcademy23/easel-annotation
Biodiversity Genomics Academy 2023: EASEL: software for eukaryotic structural and functional genome annotation
BGAcademy23/ena-ebi-stands
Biodiversity Genomics Academy 2023: ENA Standards and Submission
BGAcademy23/MitoHiFi
Biodiversity Genomics Academy 2023: Assembling Mitogenomes from PacBio HiFi reads using MitoHiFi
BGAcademy23/mitohifi-old
MitoHifi at Biodiversity Genomics Academy 2023
BGAcademy23/ncbi-cgv
Biodiversity Genomics Academy 2023: Compare whole genome assembly alignments using NCBI’s Comparative Genome Viewer (CGV)
BGAcademy23/nextflow-genomics
Biodiversity Genomics Academy 2023: Introduction to NextFlow for genomics
BGAcademy23/oma-omark
Biodiversity Genomics Academy 2023: OMA and OMArk for homology exploration and gene annotation quality control
BGAcademy23/pangenome
Biodiversity Genomics Academy 2023: Pangenome Assembly and Assessment using Minigraph and Bandage
BGAcademy23/template
BGA23 session template
BGAcademy23/test
BGAcademy23/treeval-curation
Biodiversity Genomics Academy 2023: The Treeval pipeline: Generating evidence for manual curation
BGAcademy23/vgpgalaxy
Biodiversity Genomics Academy 2023: Assembling Genomes with the VGP-Galaxy Pipeline