BioJulia/BioStructures.jl

BioStructures fails to parse certain PDB files from SCOPe/ASTRAL archive

tanhevg opened this issue · 1 comments

Expected Behavior

BioStructures.jl should be able to parse all files from SCOPe/ASTRAL: http://scop.berkeley.edu/downloads/pdbstyle/pdbstyle-sel-gs-bib-95-2.07.tgz

Current Behavior

BioStructures.jl fails on 2962 files, for example d9pcya_. Full list of files attached:
biostructures_test_scop95.txt

Steps to Reproduce (for bugs)

download pdbs from http://scop.berkeley.edu/downloads/pdbstyle/pdbstyle-sel-gs-bib-95-2.07.tgz and unzip

using BioStructures
read("d9pcya_.ent", PDB)

Context

Your Environment

  • Package Version used: 0.4.0
  • Julia Version used: 1.0.3
  • Operating System and version (desktop or mobile): Linux 3.10.0-862.14.4.el7.x86_64
  • Link to your project:

Fixed by #12.