BioStructures fails to parse certain PDB files from SCOPe/ASTRAL archive
tanhevg opened this issue · 1 comments
tanhevg commented
Expected Behavior
BioStructures.jl
should be able to parse all files from SCOPe/ASTRAL: http://scop.berkeley.edu/downloads/pdbstyle/pdbstyle-sel-gs-bib-95-2.07.tgz
Current Behavior
BioStructures.jl
fails on 2962 files, for example d9pcya_
. Full list of files attached:
biostructures_test_scop95.txt
Steps to Reproduce (for bugs)
download pdbs from http://scop.berkeley.edu/downloads/pdbstyle/pdbstyle-sel-gs-bib-95-2.07.tgz and unzip
using BioStructures
read("d9pcya_.ent", PDB)
Context
Your Environment
- Package Version used: 0.4.0
- Julia Version used: 1.0.3
- Operating System and version (desktop or mobile): Linux 3.10.0-862.14.4.el7.x86_64
- Link to your project:
jgreener64 commented
Fixed by #12.