BioMinnie

BioMinnie's Stars

• gamcil/clinker

  Gene cluster comparison figure generator

  Language:Python531149172

• rrwick/Long-read-assembler-comparison

  Benchmarking of long-read assembly tools for bacterial whole genomes

  Language:Python17015414

• pha4ge/hAMRonization

  Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure

  Language:Python142195530

• nrennie/aRt

  R package to create generative art.

  Language:R1323611

• telatin/covtobed

  ⛰ covtobed | Convert the coverage track from a BAM file into a BED file

  Language:C++431123

• zheminzhou/EToKi

  all methods related to Enterobase

  Language:Python39101218

• happykhan/BRIG

  BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a focus on handling genome assembly data.

  Language:Java285327

• ISUgenomics/SequelTools

  new repo

  Language:Shell276206

• andrewjpage/krocus

  Predict MLST directly from uncorrected long reads

  Language:Python255116

• phiweger/uv

  Finding prophage regions in bacterial genomes using brute force

  Language:Python222112

• typhoidgenomics/genotyphi

  Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)

  Language:Python2251010

• haotianteng/BoostNano

  A segmentation toolkit for segment the Nanopore RNA signal.

  Language:Python18432

• linsalrob/genbank_to

  Convert genbank files to a swath of other formats

  Language:Python14431

• JamesStimson/transcluster

  Infer transmission clusters from SNP and timing data

  Language:R13164

• andersgs/harrietr

  An `R` package for various phylogenetic and evolutionary biology data manipulations

  Language:R12313

• karubiotools/getSequenceInfo

  A Perl script allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories

  Language:Perl12204

• lskatz/pdtk

  NCBI Pathogen Detection Portal toolkit

  Language:Perl11210

• daveuu/baga

  Bacterial and Archaeal Genome Analyser

  Language:Python93152

• fanglab/BEAST

  Bacterial Epigenomics Analysis SuiTe

  Language:R9512

• rrwick/Klebsiella-assembly-species

  a tool for assigning species to Klebsiella assemblies

  Language:Python9201

• fanglab/SMALR

  SMALR: a framework for single-molecule level interrogation of the methylation status of SMRT reads.

  Language:Python83156

• stefanogg/staph_adaptation_paper

  Scripts to analyse within-host evolution during S. aureus colonisation and infection

  Language:Python7261

• fanglab/SMRTER

  Single Molecule Real Time sequencing Epigenetic Refinement

  Language:R6442

• samlipworth/snpit

  A tool for speciating M. tuberculosis isolates from WGS

  Language:Python6102

• leosanbu/MethylationProject

  Language:R3102

• JosieMB/MV_trees

  Language:Perl2011

• phac-nml/irida-pipeline-plugins

  A list of pipeline plugins available for IRIDA

  2633

• rguerillot/scripts

  Language:Python2100

• ajveltri22/convert_biosample_to_sra

  Language:Python110

• mttmartin/biosample2sra_accessions

  Convert BioSample accessions to SRA accessions

  Language:Python1100