BiocPy

Facilitate Bioconductor Workflows in Python

Pinned Repositories

BiocFrame
Bioconductor-like data frames
Language:Python4 1 263
cellarr
Store collections of experimental data based on TileDB
Language:Python2 3 100
GenomicRanges
Container class to represent genomic locations and support genomic analysis
Language:Python16 2 404
HDF5Array
HDF5 File-backed arrays for Python
Language:Python0 1 10
MultiAssayExperiment
Container class to represent and manage multi-omics genomic experiments
Language:Python5 1 61
rds2py
Read RDS files, in Python
Language:Python14 2 83
scranpy
Single-cell data analysis, from C++ to Python
Language:Python6 2 100
SingleCellExperiment
Container class for single-cell experiments
Language:Python5 1 101
singler
Python bindings to the SingleR algorithm
Language:Python6 2 30
SummarizedExperiment
Container class for genomic experiments
Language:Python5 2 202

BiocPy's Repositories

BiocPy/GenomicRanges
Container class to represent genomic locations and support genomic analysis
Language:Python16 2 404
BiocPy/rds2py
Read RDS files, in Python
Language:Python14 2 83
BiocPy/scranpy
Single-cell data analysis, from C++ to Python
Language:Python6 2 100
BiocPy/singler
Python bindings to the SingleR algorithm
Language:Python6 2 30
BiocPy/MultiAssayExperiment
Container class to represent and manage multi-omics genomic experiments
Language:Python5 1 61
BiocPy/SingleCellExperiment
Container class for single-cell experiments
Language:Python5 1 101
BiocPy/SummarizedExperiment
Container class for genomic experiments
Language:Python5 2 202
BiocPy/BiocFrame
Bioconductor-like data frames
Language:Python4 1 263
BiocPy/cellarr
Store collections of experimental data based on TileDB
Language:Python2 3 100
BiocPy/IRanges
IRanges in Python
Language:Python2 2 50
BiocPy/Biocborn
bioc objects + seaborn
Language:Python1 2 00
BiocPy/BiocPy
Interface to all BiocPy packages
Language:Python1 1 21
BiocPy/pyBiocFileCache
Python implementation of the BiocFileCache R package
Language:Python1 1 42
BiocPy/scrnaseq
Collection of public single-cell RNA-seq datasets
Language:Python1 2 0
BiocPy/tutorial
tutorial for all bioconductor representations in Python
Language:TeX1 2 10
BiocPy/.github
0 1 00
BiocPy/HDF5Array
HDF5 File-backed arrays for Python
Language:Python0 1 10
BiocPy/mopsy
Matrix operations
Language:Python0 1 11
BiocPy/assorthead
Assorted C++ headers, vendored into a Python package.
Language:Python2 0
BiocPy/BiocUtils
Miscellaneous utilities for BiocPy, mostly to mimic base functionality in R.
Language:Python2 5
BiocPy/BiocWorkshop2024
Language:Jupyter Notebook1
BiocPy/celldex
Collection of reference cell type datasets
Language:Python2 0
BiocPy/cpptypes
Automatically generate wrappers for ctypes with C++
Language:Python2 0
BiocPy/DelayedArray
DelayedArrays, in Python
Language:Python3 5
BiocPy/developer_guide
2 1
BiocPy/generics
BiocPy generics
Language:Python1 3
BiocPy/mattress
Interface to tatami representations
Language:Python2 2
BiocPy/mattress-broken
Interface to tatami representations
Language:Python2 1
BiocPy/TileDBArray
TileDB backed delayed arrays for Python
Language:Python2 1