BiocPy

Facilitate Bioconductor Workflows in Python

Pinned Repositories

BiocFrame
Bioconductor-like data frames
Language:Python4 1 263
cellarr
Store collections of experimental data based on TileDB
Language:Python3 3 201
GenomicRanges
Container class to represent genomic locations and support genomic analysis
Language:Python17 2 464
IRanges
IRanges in Python
Language:Python3 2 50
MultiAssayExperiment
Container class to represent and manage multi-omics genomic experiments
Language:Python5 1 61
rds2py
Read RDS files, in Python
Language:Python16 2 93
scranpy
Single-cell data analysis, from C++ to Python
Language:Python8 2 100
scrnaseq
Collection of public single-cell RNA-seq datasets
Language:Python1 2 20
SingleCellExperiment
Container class for single-cell experiments
Language:Python6 1 111
SummarizedExperiment
Container class for genomic experiments
Language:Python5 2 222

BiocPy's Repositories

BiocPy/GenomicRanges
Container class to represent genomic locations and support genomic analysis
Language:Python17 2 464
BiocPy/rds2py
Read RDS files, in Python
Language:Python16 2 93
BiocPy/scranpy
Single-cell data analysis, from C++ to Python
Language:Python8 2 100
BiocPy/SingleCellExperiment
Container class for single-cell experiments
Language:Python6 1 111
BiocPy/MultiAssayExperiment
Container class to represent and manage multi-omics genomic experiments
Language:Python5 1 61
BiocPy/SummarizedExperiment
Container class for genomic experiments
Language:Python5 2 222
BiocPy/BiocFrame
Bioconductor-like data frames
Language:Python4 1 263
BiocPy/cellarr
Store collections of experimental data based on TileDB
Language:Python3 3 201
BiocPy/IRanges
IRanges in Python
Language:Python3 2 50
BiocPy/BiocPy
Interface to all BiocPy packages
Language:Python2 1 21
BiocPy/Biocborn
bioc objects + seaborn
Language:Python1 2 00
BiocPy/BiocSetup
Quickly setup new BiocPy packages
Language:Python1
BiocPy/developer_guide
1 3 1
BiocPy/GenomicArrays
Language:Python1
BiocPy/pyBiocFileCache
Python implementation of the BiocFileCache R package
Language:Python1 1 52
BiocPy/scrnaseq
Collection of public single-cell RNA-seq datasets
Language:Python1 2 20
BiocPy/tutorial
tutorial for all bioconductor representations in Python
Language:TeX1 2 10
BiocPy/.github
0 1 00
BiocPy/HDF5Array
HDF5 File-backed arrays for Python
Language:Python0 1 10
BiocPy/mopsy
Matrix operations
Language:Python0 1 21
BiocPy/assorthead
Assorted C++ headers, vendored into a Python package.
Language:Python2 0
BiocPy/BiocUtils
Miscellaneous utilities for BiocPy, mostly to mimic base functionality in R.
Language:Python2 6
BiocPy/BiocWorkshop2024
Language:Jupyter Notebook2 01
BiocPy/bioRAT
Language:Python
BiocPy/cpptypes
Automatically generate wrappers for ctypes with C++
Language:Python2 0
BiocPy/DelayedArray
DelayedArrays, in Python
Language:Python3 6
BiocPy/generics
BiocPy generics
Language:Python1 3
BiocPy/mattress-broken
Interface to tatami representations
Language:Python2 1
BiocPy/TileDBArray
TileDB backed delayed arrays for Python
Language:Python2 1